Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053992 | Potato | nucleus | 92.74 | 92.33 |
| Solyc05g032750.2.1 | Tomato | nucleus | 60.44 | 61.87 |
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 13.45 | 60.32 |
| Os01t0714100-01 | Rice | cytosol | 18.94 | 54.18 |
| VIT_11s0016g01690.t01 | Wine grape | cytosol | 55.13 | 52.98 |
| KRH12468 | Soybean | cytosol | 46.9 | 47.41 |
| CDY16548 | Canola | nucleus | 42.04 | 46.07 |
| CDX92449 | Canola | nucleus | 39.82 | 45.92 |
| GSMUA_Achr1P05230_001 | Banana | nucleus | 44.25 | 45.66 |
| CDY45081 | Canola | nucleus | 42.83 | 45.62 |
| Bra020112.1-P | Field mustard | nucleus | 43.01 | 45.51 |
| KRH37453 | Soybean | cytosol | 48.94 | 45.22 |
| KRH02657 | Soybean | nucleus | 7.08 | 43.96 |
| AT5G20610.1 | Thale cress | nucleus | 44.78 | 43.47 |
| KRH19252 | Soybean | nucleus | 29.65 | 42.84 |
| Bra002315.1-P | Field mustard | nucleus | 43.1 | 41.13 |
| Zm00001d043666_P001 | Maize | nucleus | 40.8 | 40.26 |
| OQU87417 | Sorghum | nucleus | 41.24 | 40.24 |
| Zm00001d011716_P001 | Maize | nucleus | 40.71 | 40.07 |
| TraesCS3D01G248600.1 | Wheat | nucleus | 40.18 | 40.0 |
| HORVU3Hr1G067440.1 | Barley | plastid | 34.51 | 39.2 |
| Solyc08g062500.2.1 | Tomato | mitochondrion | 34.51 | 37.32 |
| Zm00001d042647_P001 | Maize | mitochondrion | 6.19 | 37.23 |
| TraesCS3B01G277400.1 | Wheat | cytosol | 39.38 | 36.75 |
| Zm00001d044668_P001 | Maize | extracellular | 24.16 | 36.06 |
| Zm00001d037913_P001 | Maize | plastid | 5.22 | 26.7 |
| Zm00001d020517_P001 | Maize | mitochondrion | 11.42 | 26.65 |
| Solyc10g006330.2.1 | Tomato | cytosol, nucleus | 17.88 | 22.88 |
Protein Annotations
| EnsemblPlants:Solyc07g041180.2.1 | EnsemblPlantsGene:Solyc07g041180.2 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR019448 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | InterPro:NT-C2 | ncoils:Coil | PANTHER:PTHR33414 | PANTHER:PTHR33414:SF1 |
| PFAM:PF01476 | PFAM:PF10358 | PFscan:PS51782 | PFscan:PS51840 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | UniParc:UPI000276B811 | UniProt:K4CDZ2 | MapMan:20.5.6 | : | : |
Description
No Description!
Coordinates
chr7:+:51972074..51975606
Molecular Weight (calculated)
124161.0 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.570
Length
1130 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSKIGGNEKL LDDIEALNKA LCSDNKGGRR SLMLGASNRS TSVGKTHQKS KNRDDLSGKE NKKSIWSWKG LKSLAVRNKK FNCCFSVQVH SIEGLSTLFD
0101: ELCLVVHWKR RDGELTTRPV VVSKGVAEFE EQLTHTCSVS GSKNGPNQSA KYEAKHFLLY ASIYATPDLD LGKHRVDLTR LLPLALDELE ENSSGKWSTS
0201: FRLSGKAKGA TMNVSFEYHI VGKTFTVFPS STSLLDVNNL RRNSEKIAKI LAQCEQSDEL SKTMRRAGSL PARSSASQCS AENIKDLHEV LPVPSSELSV
0301: SVNVMYQKLE EEKVEYSVDC KPQIDVCCDD VKTLKPNIAL LSEPEKGNIE NADDLSEVSI RDQGIEVASE VQEEKEEETT KTGDTPSEEN AEPNSSFGMF
0401: NEEEPQLALL SKEVDTQNKD LSASTCNFET DKSSKESIMK ELESALKRVS DLENEGFDSQ DDENEVINHD GGLNIKGNFE ELRKGKSLSL DYDAESVASD
0501: FLDMLGIEHN QFSLSSESEP DSPRERLLRQ FEKDTLADGG SLFNFDEDID HQDFACDAST GSDWRSIYED FDYSCNVEMP KIEIEATSNK IGASMLEDLE
0601: TEALMYEWGL NERAFQRSPP RSSSGFGSPI DIPHEDPSEL PPLGEGLGPF IKTKNGGFLR SVNPSLFKNA KSGGSLIMQV SSPVVVPAEM GSGIMDILHH
0701: LASIGIEKLS IQANKLMPLE DITGQTMQHI GWETAPSLDG TVRQEFLQHE FEYGKNMAGI QSNKGKLHRP KSSSKLESNS AGLDKDSEYV SLEDLAPLAM
0801: DKIEALSIEG LRIQSGMSDE DTPSNVSSKP IGEFSAIEGK KVNFGGAVGL EGTGGLQLLD VKDNDGGGEV DGLMGLSLTL DEWMKLDAGE IDEISERTSK
0901: LLAAHHGTCT DLFRGRSKKR GKGKNCGLLG NSFTVALMVQ LRDPLRNYEP VGTPMLALVQ VERVFVTPKA KIYSTVSQVR KSNEDDDDNE LKSPQKEAGG
1001: VDVKEEQIRE DEEIPQYKIT GVHVAGLKTE QGKKKLWGSS SQQQSGSRWL LANGMGKKNK HPLMKSKGIN KSSIAAASSL ATTTVQPGET LWSISSRVHG
1101: TGAKWEELAA LNPHIRNPNV IFPNEKIRLR
0101: ELCLVVHWKR RDGELTTRPV VVSKGVAEFE EQLTHTCSVS GSKNGPNQSA KYEAKHFLLY ASIYATPDLD LGKHRVDLTR LLPLALDELE ENSSGKWSTS
0201: FRLSGKAKGA TMNVSFEYHI VGKTFTVFPS STSLLDVNNL RRNSEKIAKI LAQCEQSDEL SKTMRRAGSL PARSSASQCS AENIKDLHEV LPVPSSELSV
0301: SVNVMYQKLE EEKVEYSVDC KPQIDVCCDD VKTLKPNIAL LSEPEKGNIE NADDLSEVSI RDQGIEVASE VQEEKEEETT KTGDTPSEEN AEPNSSFGMF
0401: NEEEPQLALL SKEVDTQNKD LSASTCNFET DKSSKESIMK ELESALKRVS DLENEGFDSQ DDENEVINHD GGLNIKGNFE ELRKGKSLSL DYDAESVASD
0501: FLDMLGIEHN QFSLSSESEP DSPRERLLRQ FEKDTLADGG SLFNFDEDID HQDFACDAST GSDWRSIYED FDYSCNVEMP KIEIEATSNK IGASMLEDLE
0601: TEALMYEWGL NERAFQRSPP RSSSGFGSPI DIPHEDPSEL PPLGEGLGPF IKTKNGGFLR SVNPSLFKNA KSGGSLIMQV SSPVVVPAEM GSGIMDILHH
0701: LASIGIEKLS IQANKLMPLE DITGQTMQHI GWETAPSLDG TVRQEFLQHE FEYGKNMAGI QSNKGKLHRP KSSSKLESNS AGLDKDSEYV SLEDLAPLAM
0801: DKIEALSIEG LRIQSGMSDE DTPSNVSSKP IGEFSAIEGK KVNFGGAVGL EGTGGLQLLD VKDNDGGGEV DGLMGLSLTL DEWMKLDAGE IDEISERTSK
0901: LLAAHHGTCT DLFRGRSKKR GKGKNCGLLG NSFTVALMVQ LRDPLRNYEP VGTPMLALVQ VERVFVTPKA KIYSTVSQVR KSNEDDDDNE LKSPQKEAGG
1001: VDVKEEQIRE DEEIPQYKIT GVHVAGLKTE QGKKKLWGSS SQQQSGSRWL LANGMGKKNK HPLMKSKGIN KSSIAAASSL ATTTVQPGET LWSISSRVHG
1101: TGAKWEELAA LNPHIRNPNV IFPNEKIRLR
0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
Arabidopsis Description
PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.