Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plasma membrane 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 14.34 | 62.3 |
| Os01t0714100-01 | Rice | cytosol | 21.28 | 58.99 |
| VIT_11s0016g01690.t01 | Wine grape | cytosol | 51.96 | 48.38 |
| Solyc05g032750.2.1 | Tomato | nucleus | 47.95 | 47.55 |
| PGSC0003DMT400028119 | Potato | cytosol | 49.5 | 47.34 |
| KRH02657 | Soybean | nucleus | 7.85 | 47.25 |
| OQU87417 | Sorghum | nucleus | 49.95 | 47.24 |
| Zm00001d011716_P001 | Maize | nucleus | 49.5 | 47.21 |
| HORVU3Hr1G067440.1 | Barley | plastid | 42.65 | 46.93 |
| Zm00001d043666_P001 | Maize | nucleus | 49.04 | 46.9 |
| TraesCS3D01G248600.1 | Wheat | nucleus | 47.85 | 46.17 |
| PGSC0003DMT400053992 | Potato | nucleus | 46.12 | 44.49 |
| Solyc07g041180.2.1 | Tomato | nucleus | 45.66 | 44.25 |
| Zm00001d044668_P001 | Maize | extracellular | 30.5 | 44.12 |
| TraesCS3B01G277400.1 | Wheat | cytosol | 47.76 | 43.19 |
| CDY16548 | Canola | nucleus | 40.37 | 42.87 |
| Zm00001d042647_P001 | Maize | mitochondrion | 7.31 | 42.55 |
| CDY45081 | Canola | nucleus | 41.19 | 42.51 |
| Bra020112.1-P | Field mustard | nucleus | 41.37 | 42.42 |
| KRH12468 | Soybean | cytosol | 43.1 | 42.22 |
| CDX92449 | Canola | nucleus | 37.63 | 42.04 |
| KRH37453 | Soybean | cytosol | 45.48 | 40.72 |
| AT5G20610.1 | Thale cress | nucleus | 42.28 | 39.78 |
| KRH19252 | Soybean | nucleus | 28.13 | 39.39 |
| Bra002315.1-P | Field mustard | nucleus | 40.64 | 37.58 |
| Zm00001d020517_P001 | Maize | mitochondrion | 15.89 | 35.95 |
| Zm00001d037913_P001 | Maize | plastid | 7.21 | 35.75 |
| GSMUA_Achr11P... | Banana | extracellular | 18.08 | 28.91 |
| GSMUA_Achr1P02110_001 | Banana | extracellular | 16.07 | 26.07 |
| GSMUA_Achr5P11690_001 | Banana | endoplasmic reticulum, golgi | 14.79 | 24.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P05230_001 | EnsemblPlants:GSMUA_Achr1T05230_001 | EnsemblPlantsGene:GSMUA_Achr1G05230_001 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR019448 |
| InterPro:IPR036779 | InterPro:LysM_dom | InterPro:LysM_dom_sf | InterPro:NT-C2 | ncoils:Coil | PANTHER:PTHR33414 |
| PANTHER:PTHR33414:SF1 | PFAM:PF01476 | PFAM:PF10358 | PFscan:PS51782 | PFscan:PS51840 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0002955125 | UniProt:M0RX81 | MapMan:20.5.6 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G05230_001]
Coordinates
chr1:-:4333333..4337327
Molecular Weight (calculated)
119421.0 Da
IEP (calculated)
5.620
GRAVY (calculated)
-0.524
Length
1095 amino acids
Sequence
(BLAST)
(BLAST)
0001: MIGKPAFGKG KPGSSGGSDQ QGNARFLHEI EALSKALSVD PKQPRHPRSS SDDRRSISAG RSHLKAPSNP KPSSSDKQKD KKKPGSSSLW GWNPIKKALS
0101: HIGGHRRFDC CFSLHVHSIE GLPAALAGAS LAVYWRRTTD PVSSAAATRP ARVLHGAALF GESLTYRCSV HGARSGPGGT AKYEARHFLI YPALTVGAPG
0201: LDLGRHLVDL TRVLPATLEE LEDAEKAFGK WSTSYRLSGK ARGASLNVSF GFSLVGNNSV DAGAREREGS RMLNSEEGGL DKVNWQGPMA PAGSRLQHHG
0301: RCQSVKDVKV LHEELPTLDA DAKRELQIIS HLPKPCILPE AVKGSDEREC DEPKFMVIEH GVEIQESHNL HDASLLTGEA KMEEGSDMKI HEPDAEEAEH
0401: DIYNPQDATL LAVDPPVQDL DSIFGELSVL ELGEFESPDI QGKPAKQLSH GDIKSNYKMA NLLSRSRSLD AVTESVASEF LSMLGIEHSP FGLSSDSDPD
0501: SPRERLWKQF EKESLASGDN IFGLDAGMEK QPYWDELSDG LDLSVIIQEA ETELQNAELA MNNMKSRAKM LEDAETEALM HAWGLNEEAF HCSPPGSGGG
0601: FGSPIDLPPE EPLELPLLGE GLGPIVQTKD GGFLRSMNPL MFRNAKNKEN LIMQVSSPIV VPAEMGSGIM EILQRLASVG IEKLSRQASK LMPLEDITGK
0701: TMQQIAWDSA TALDSCERND LLENHYPETG LAASHNVSGR RKKGNGMSLA SSSTGEMISE YVSLEDLAPM AMDKIEALSI EGLRIQTGMS DEEAPSNVSP
0801: QSIGEISALE GKGADNSWSL GLEGTAGLQL LDIKDSGHDV DGLMGLSITL DEWMKLDSGI IDEEDQDSDR TSKILAAHHA NSMDLICGEW KEDKRGRKKS
0901: GRKWGLLGNN FTVALMVQLR NPLRNYEPVG TPMLALIQVE RVFVPPKPKI YSTVSEKGNS EQEDEVETES KPLTKEEKHE EEVIPQYKIT EVHVAGLKTE
1001: PNKRSLWGNP KQQQSGSRWL LATGMGKSNK HPFMKSKTVA KPSQDMTAKV QPGDTLWSIS SRVHGSGAKW KELAALNPHI RNPNIIFPNE TIKLR
0101: HIGGHRRFDC CFSLHVHSIE GLPAALAGAS LAVYWRRTTD PVSSAAATRP ARVLHGAALF GESLTYRCSV HGARSGPGGT AKYEARHFLI YPALTVGAPG
0201: LDLGRHLVDL TRVLPATLEE LEDAEKAFGK WSTSYRLSGK ARGASLNVSF GFSLVGNNSV DAGAREREGS RMLNSEEGGL DKVNWQGPMA PAGSRLQHHG
0301: RCQSVKDVKV LHEELPTLDA DAKRELQIIS HLPKPCILPE AVKGSDEREC DEPKFMVIEH GVEIQESHNL HDASLLTGEA KMEEGSDMKI HEPDAEEAEH
0401: DIYNPQDATL LAVDPPVQDL DSIFGELSVL ELGEFESPDI QGKPAKQLSH GDIKSNYKMA NLLSRSRSLD AVTESVASEF LSMLGIEHSP FGLSSDSDPD
0501: SPRERLWKQF EKESLASGDN IFGLDAGMEK QPYWDELSDG LDLSVIIQEA ETELQNAELA MNNMKSRAKM LEDAETEALM HAWGLNEEAF HCSPPGSGGG
0601: FGSPIDLPPE EPLELPLLGE GLGPIVQTKD GGFLRSMNPL MFRNAKNKEN LIMQVSSPIV VPAEMGSGIM EILQRLASVG IEKLSRQASK LMPLEDITGK
0701: TMQQIAWDSA TALDSCERND LLENHYPETG LAASHNVSGR RKKGNGMSLA SSSTGEMISE YVSLEDLAPM AMDKIEALSI EGLRIQTGMS DEEAPSNVSP
0801: QSIGEISALE GKGADNSWSL GLEGTAGLQL LDIKDSGHDV DGLMGLSITL DEWMKLDSGI IDEEDQDSDR TSKILAAHHA NSMDLICGEW KEDKRGRKKS
0901: GRKWGLLGNN FTVALMVQLR NPLRNYEPVG TPMLALIQVE RVFVPPKPKI YSTVSEKGNS EQEDEVETES KPLTKEEKHE EEVIPQYKIT EVHVAGLKTE
1001: PNKRSLWGNP KQQQSGSRWL LATGMGKSNK HPFMKSKTVA KPSQDMTAKV QPGDTLWSIS SRVHGSGAKW KELAALNPHI RNPNIIFPNE TIKLR
0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
Arabidopsis Description
PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.