Factsheet for Bra012488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64689	Canola	plasma membrane	90.75	76.59
CDY62464	Canola	plasma membrane	88.7	70.19
AT1G25270.1	Thale cress	plasma membrane	72.95	60.0
Bra024767.1-P	Field mustard	plasma membrane	74.66	59.89
Bra033954.1-P	Field mustard	golgi, plasma membrane, vacuole	44.86	47.12
Bra002077.1-P	Field mustard	plasma membrane	46.23	37.19
Bra025414.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.58	30.14
PGSC0003DMT400077027	Potato	plasma membrane	29.11	29.11
Solyc07g015910.2.1	Tomato	plasma membrane	38.36	28.5
Bra031664.1-P	Field mustard	plasma membrane	32.53	26.1
Bra020026.1-P	Field mustard	plasma membrane	33.22	25.19
Bra033290.1-P	Field mustard	plasma membrane	29.79	24.51
Bra000926.1-P	Field mustard	plasma membrane	27.4	24.46
Bra032618.1-P	Field mustard	plasma membrane	29.79	23.64
Bra032617.1-P	Field mustard	plasma membrane	28.42	22.99
Bra000923.1-P	Field mustard	plasma membrane	27.05	22.01
Bra020740.1-P	Field mustard	extracellular	15.07	21.78
Bra037413.1-P	Field mustard	plasma membrane	27.05	21.76
Bra000925.1-P	Field mustard	plasma membrane	25.34	21.57
Bra008545.1-P	Field mustard	endoplasmic reticulum, plasma membrane	20.21	21.53
Bra029909.1-P	Field mustard	plasma membrane	18.49	21.34
Bra008548.1-P	Field mustard	extracellular, plasma membrane	25.0	20.92
Bra036199.1-P	Field mustard	plasma membrane	28.08	20.45
Bra008546.1-P	Field mustard	cytosol, extracellular, plastid	9.93	12.5

Protein Annotations

EnsemblPlants:Bra012488.1	EnsemblPlants:Bra012488.1-P	EnsemblPlantsGene:Bra012488	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:EamA_dom	InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF7	PFAM:PF00892	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002541243	UniProt:M4D7M8	MapMan:24.2.1.5	:

Description

AT1G25270 (E=1e-057) | LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).

Coordinates

chrA07:+:7256658..7259290

Molecular Weight (calculated)

31721.7 Da

IEP (calculated)

10.269

GRAVY (calculated)

0.661

Length

292 amino acids

Sequence
(BLAST)

001: MLEEVKAAIA MLVVQFIFAG MFILFKITAH DGTNLRILVA YRLSFATLFM FPLALIFQRK KRPEFTRRLV LLAFLSGLLG AAIPNILYLP GLVRTSATFS
101: TAASILSPVI TLVLSLAFRM DTLRLGSNEG RAKLLGTLLG VGGALVFVFY KGFELHIWST HVDLLKSSGQ SSGPATENHH HISISGGVVV SGLVMPLVAW
201: CIEKKGPLYV TVFSPIRLVI VALVGSFALE ETLYLGSLIG AIIMVGGVYL VVWCKMKEKK SVSTTTDHVE TNKNIKEVSL GNLSAVNNRD VP

Best Arabidopsis Sequence Match ( AT1G25270.1 )
(BLAST)

001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP

Arabidopsis Description

WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.