Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42121 | Canola | plasma membrane | 76.06 | 78.49 |
| Bra024767.1-P | Field mustard | plasma membrane | 79.15 | 77.2 |
| CDY64689 | Canola | plasma membrane | 71.83 | 73.7 |
| CDY59354 | Canola | plasma membrane | 78.87 | 73.3 |
| Bra012488.1-P | Field mustard | plasma membrane | 60.0 | 72.95 |
| CDY62464 | Canola | plasma membrane | 71.55 | 68.83 |
| AT1G68170.2 | Thale cress | plasma membrane | 57.18 | 55.46 |
| PGSC0003DMT400077027 | Potato | plasma membrane | 31.55 | 38.36 |
| Solyc07g015910.2.1 | Tomato | plasma membrane | 38.31 | 34.61 |
| AT1G09380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 32.96 | 31.28 |
| AT3G30340.1 | Thale cress | plasma membrane | 31.27 | 30.49 |
| AT4G01430.1 | Thale cress | plasma membrane | 30.99 | 30.14 |
| AT1G01070.1 | Thale cress | golgi, plasma membrane, vacuole | 29.3 | 28.49 |
| AT1G11460.1 | Thale cress | golgi, plasma membrane, vacuole | 27.04 | 28.49 |
| AT4G01450.2 | Thale cress | plasma membrane | 27.89 | 27.42 |
| AT1G11450.3 | Thale cress | golgi, plasma membrane, vacuole | 26.76 | 26.99 |
| AT4G01440.1 | Thale cress | plasma membrane | 26.76 | 26.03 |
Protein Annotations
| MapMan:24.2.1.5 | EntrezGene:839110 | ProteinID:AAG40088.1 | ProteinID:AEE30595.1 | ArrayExpress:AT1G25270 | EnsemblPlantsGene:AT1G25270 |
| RefSeq:AT1G25270 | TAIR:AT1G25270 | RefSeq:AT1G25270-TAIR-G | EnsemblPlants:AT1G25270.1 | TAIR:AT1G25270.1 | Unigene:At.51763 |
| EMBL:DQ056463 | InterPro:EamA_dom | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | RefSeq:NP_173898.2 | PFAM:PF00892 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF7 | UniProt:Q4PT23 |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000053118C | InterPro:WAT1-related | SEG:seg | : |
Description
WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
Coordinates
chr1:+:8857726..8859909
Molecular Weight (calculated)
38578.3 Da
IEP (calculated)
9.600
GRAVY (calculated)
0.701
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.