Factsheet for PGSC0003DMT400077027

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
golgi 3
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g015910.2.1	Tomato	plasma membrane	90.07	66.92
PGSC0003DMT400076507	Potato	plasma membrane	43.84	32.82
PGSC0003DMT400010115	Potato	golgi, plasma membrane, vacuole	38.36	32.09
CDY42121	Canola	plasma membrane	37.67	31.98
Bra024767.1-P	Field mustard	plasma membrane	39.73	31.87
AT1G25270.1	Thale cress	plasma membrane	38.36	31.55
CDY59354	Canola	plasma membrane	40.07	30.63
AT1G68170.2	Thale cress	plasma membrane	38.36	30.6
Bra033954.1-P	Field mustard	golgi, plasma membrane, vacuole	29.11	30.58
CDY12698	Canola	plasma membrane	39.38	30.26
CDX81497	Canola	plasma membrane	39.38	30.18
CDY64689	Canola	plasma membrane	35.62	30.06
CDY64463	Canola	plasma membrane	12.67	29.13
Bra012488.1-P	Field mustard	plasma membrane	29.11	29.11
CDY62464	Canola	plasma membrane	36.64	29.0
PGSC0003DMT400007108	Potato	plasma membrane	33.22	28.87
CDY24356	Canola	plasma membrane	35.27	28.37
Bra002077.1-P	Field mustard	plasma membrane	35.27	28.37
PGSC0003DMT400010825	Potato	plasma membrane	33.9	28.05
PGSC0003DMT400011804	Potato	plasma membrane	31.85	25.83
PGSC0003DMT400029440	Potato	plasma membrane	20.21	24.79
CDY62465	Canola	extracellular, plasma membrane, vacuole	19.52	23.36
PGSC0003DMT400015286	Potato	plasma membrane	28.77	22.83
PGSC0003DMT400010175	Potato	golgi	31.51	22.17
PGSC0003DMT400001491	Potato	golgi, plasma membrane, plastid	19.86	19.08
PGSC0003DMT400075201	Potato	mitochondrion	10.62	17.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400077027	EnsemblPlantsGene:PGSC0003DMG400029960	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF7	PFAM:PF00892	PGSC:PGSC0003DMG400029960	SUPFAM:SSF103481
TMHMM:TMhelix	UniParc:UPI0002962D56	UniProt:M1CXT2	MapMan:24.2.1.5	:	:

Description

Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG400029960]

Coordinates

chr7:+:8560420..8567130

Molecular Weight (calculated)

32765.5 Da

IEP (calculated)

9.976

GRAVY (calculated)

0.677

Length

292 amino acids

Sequence
(BLAST)

001: MGKICDKVHG LKPIIMMVFI QIGYAGMTLL YKLASNDGMS LRILIAYRFL FAAATVLPLA LYFDRKSRPK MTWMVMLLAF LSALFGLEQL NLKTRGGQAK
101: MLGTLIGIGG AMLLTFYKGL EIKTWSIKLD FKEHMATSQQ NQKPYAHILG PILAICSCFS SALSLIFQAK MSELYPCHFS STALMSIMGA LQAGVYAIST
201: ERDWTQWKLG WNLRLFAVLY AGVVASGLAI IFLMFCVRMR GPLFVSIFSP LMLVCVAIAG SLFLNEKLHL GRYSFCTIYM LYISSFFHFF NM

Best Arabidopsis Sequence Match ( AT1G25270.1 )
(BLAST)

001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP

Arabidopsis Description

WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.