Factsheet for Bra024767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42121	Canola	plasma membrane	93.96	99.42
CDY59354	Canola	plasma membrane	98.35	93.72
AT1G25270.1	Thale cress	plasma membrane	77.2	79.15
Bra012488.1-P	Field mustard	plasma membrane	59.89	74.66
Bra033954.1-P	Field mustard	golgi, plasma membrane, vacuole	42.86	56.12
Bra002077.1-P	Field mustard	plasma membrane	47.53	47.66
PGSC0003DMT400077027	Potato	plasma membrane	31.87	39.73
Solyc07g015910.2.1	Tomato	plasma membrane	39.56	36.64
Bra031664.1-P	Field mustard	plasma membrane	30.49	30.49
Bra025414.1-P	Field mustard	extracellular, plasma membrane, vacuole	16.76	29.19
Bra020026.1-P	Field mustard	plasma membrane	30.77	29.09
Bra033290.1-P	Field mustard	plasma membrane	28.02	28.73
Bra032618.1-P	Field mustard	plasma membrane	28.57	28.26
Bra000926.1-P	Field mustard	plasma membrane	25.27	28.13
Bra032617.1-P	Field mustard	plasma membrane	27.75	27.98
Bra029909.1-P	Field mustard	plasma membrane	18.96	27.27
Bra008545.1-P	Field mustard	endoplasmic reticulum, plasma membrane	20.33	27.01
Bra000925.1-P	Field mustard	plasma membrane	24.73	26.24
Bra000923.1-P	Field mustard	plasma membrane	25.82	26.18
Bra008548.1-P	Field mustard	extracellular, plasma membrane	24.45	25.5
Bra037413.1-P	Field mustard	plasma membrane	25.27	25.34
Bra036199.1-P	Field mustard	plasma membrane	25.82	23.44
Bra020740.1-P	Field mustard	extracellular	11.81	21.29
Bra008546.1-P	Field mustard	cytosol, extracellular, plastid	13.46	21.12

Protein Annotations

EnsemblPlants:Bra024767.1	EnsemblPlants:Bra024767.1-P	EnsemblPlantsGene:Bra024767	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:EamA_dom	InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF7	PFAM:PF00892	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002542718	UniProt:M4E7L1	MapMan:24.2.1.5	:

Description

AT1G25270 (E=1e-149) | LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).

Coordinates

chrA09:+:22885641..22897254

Molecular Weight (calculated)

39676.6 Da

IEP (calculated)

9.686

GRAVY (calculated)

0.673

Length

364 amino acids

Sequence
(BLAST)

001: MLKEVKAISI MLVVQFIFAG MYILFKLTVD DGTNLRILVA YRLSFATISM LPLALIFQRD KRPEFTWRLL FLAFLSGMLG AAIPNFLYLP GLALTSATFS
101: TAASILGPLI TLVLSVAFRI ETLRLGTNEG RAKLVGTLLG AGGALVFVFY KGVEIHIWST HVDLLKNSNA GQSSGQATEN HHISIPGVLM VFGCNVSFSL
201: WLILQAKIGD QLGGSYWNVS LMNAMGSLVC MIVALCSERN WKQWRLGWNI SLLATVYSGV VVSGMVIPLI AWCIKTKGPL YVTMFSPIRL VIVALAGSFA
301: LEETLHLGSI IGAMIMVGGV YLVIWCKMKE AKSASATLDH IETNKNIKEV NLGNLSAINN RDVP

Best Arabidopsis Sequence Match ( AT1G25270.1 )
(BLAST)

001: MKSVVAMVAV QFIFAGMFIL FKITVDDGTN LKVLVAYRLS FATIFMLPLA LIFQRKKRPE FTWRLLLLAF VSGLLGAAIP NILYLPGMAR TSATFSAASS
101: IISPLITLVL GLVFRMETLR LGSNEGRAKL VGTLLGACGA LVFVFYKGIE IHIWSTHVDL LKGSHTGRAT TNHHVSILGV LMVLGSNVST SLWLLLQAKI
201: GKELGGLYWN TSLMNGVGSL VCVIIALCSD HDWEQWQLGW DINLLATLYS GIVVSGMVVP LVAWCIATKG PLFVTVFSPI RLVIVALIGS FALEEPLHLG
301: SIIGAMIMVG GVYLVVWCKM KEKKSASTTS DHIETNKNNK ELDLGNLSSV NRDVP

Arabidopsis Description

WAT1-related protein At1g25270 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT23]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.