Factsheet for PGSC0003DMT400075201

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096850.1.1	Tomato	plasma membrane	84.36	42.9
PGSC0003DMT400010825	Potato	plasma membrane	49.16	24.93
PGSC0003DMT400007108	Potato	plasma membrane	43.58	23.21
KRH33776	Soybean	endoplasmic reticulum	46.93	22.28
Bra031664.1-P	Field mustard	plasma membrane	45.25	22.25
KRG90488	Soybean	plasma membrane	46.37	22.13
Bra020026.1-P	Field mustard	plasma membrane	46.93	21.82
CDY69907	Canola	plasma membrane	46.93	21.82
CDX94976	Canola	plasma membrane	46.93	21.82
CDX94974	Canola	plasma membrane	45.81	21.3
KRH68417	Soybean	extracellular, golgi, plasma membrane	43.02	21.04
AT1G09380.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	43.58	20.86
KRG96698	Soybean	extracellular, golgi, plasma membrane	42.46	20.71
KRG96712	Soybean	extracellular, golgi, plasma membrane	42.46	20.71
GSMUA_Achr9P16660_001	Banana	golgi, plasma membrane, vacuole	41.9	19.95
TraesCS7A01G477400.1	Wheat	plasma membrane	39.66	18.88
TraesCS7B01G379300.1	Wheat	plasma membrane	39.66	18.88
HORVU7Hr1G108550.2	Barley	plasma membrane	39.66	18.64
TraesCS7D01G464900.2	Wheat	plasma membrane	39.11	18.57
TraesCS7B01G379400.1	Wheat	plasma membrane	38.55	18.35
TraesCS7B01G379000.1	Wheat	plasma membrane	39.11	18.32
Os01t0297700-01	Rice	plasma membrane	38.55	18.25
TraesCS7A01G477500.1	Wheat	plasma membrane	38.55	17.97
GSMUA_AchrUn_...	Banana	plasma membrane	36.87	17.6
HORVU3Hr1G040230.1	Barley	plasma membrane	37.43	17.4
TraesCS3A01G196000.1	Wheat	plasma membrane	36.31	17.15
TraesCSU01G213700.1	Wheat	plasma membrane	30.73	16.92
TraesCS3B01G227600.1	Wheat	extracellular, golgi, plasma membrane	36.31	16.88
CDY64772	Canola	plasma membrane	28.49	16.83
TraesCS3D01G199100.1	Wheat	extracellular, golgi, plasma membrane	35.75	16.62
TraesCS7D01G465000.1	Wheat	plasma membrane	35.2	16.24
PGSC0003DMT400076507	Potato	plasma membrane	35.2	16.15
Zm00001d009063_P001	Maize	plasma membrane	35.75	16.12
TraesCS7B01G388500.1	Wheat	plasma membrane	32.4	16.07
PGSC0003DMT400029440	Potato	plasma membrane	21.23	15.97
Zm00001d040593_P001	Maize	plasma membrane	34.64	15.86
TraesCS7D01G472200.2	Wheat	plasma membrane	31.84	15.83
EES00623	Sorghum	plasma membrane	35.2	15.75
CDY06357	Canola	plasma membrane	25.7	15.54
PGSC0003DMT400011804	Potato	plasma membrane	29.61	14.72
TraesCS7A01G526900.1	Wheat	plasma membrane	23.46	13.64
PGSC0003DMT400015286	Potato	plasma membrane	24.58	11.96
PGSC0003DMT400010115	Potato	golgi, plasma membrane, vacuole	22.35	11.46
PGSC0003DMT400077027	Potato	plasma membrane	17.32	10.62
PGSC0003DMT400001491	Potato	golgi, plasma membrane, plastid	15.08	8.88
PGSC0003DMT400010175	Potato	golgi	8.38	3.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400075201	EnsemblPlantsGene:PGSC0003DMG400029254	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF11	PFAM:PF00892	PGSC:PGSC0003DMG400029254	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000296CF65	UniProt:M1CUS1	MapMan:24.2.1.5	:

Description

Nodulin protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029254]

Coordinates

chr12:-:58512484..58517451

Molecular Weight (calculated)

19983.0 Da

IEP (calculated)

9.114

GRAVY (calculated)

0.394

Length

179 amino acids

Sequence
(BLAST)

001: MGKDVLPLLL MVVVQLGYAG TAIISKLVMD EGMDPYVHLS YRQILATISI APFAYFFERK TRPKLTPFTL FLIFLCSVLG VTAMQMTCII GLKNSTATIT
101: TAMANLIPAN TFLLALICRV MGSIVIVIGL YSFLWGKKKD MNDITVHVKE EESKEKKQLT NFDSELQLSK NSDVYSNSR

Best Arabidopsis Sequence Match ( AT1G09380.1 )
(BLAST)

001: MAKSDMLPFL AMVLVQIGYA GMNITSKMAM EAGMKPLILV AYRQIFATIA TFPVAFFLER KTRPKITLRI LVQVFFCSIT GATGNQVLYF VGLQNSSPTI
101: ACALTNLLPA VTFLLAAIFR QETVGIKKAS GQAKVIGTLV CVIGAMVLSF YHGHTIGIGE SKIHWAYAEN ITKHGSSSGH SNFFLGPFLI MAAAVSWAAW
201: FIIQTKMSET FAAPYTSTLL MCLMGSIQCG AIALISDHTI SDWSLSSPLR FISALYAGVV ASALAFCLMS WAMQRKGPLY VSVFSPLLLV VVAIFSWALL
301: EEKLYTGTFM GSALVVIGLY GVLWGKDREV SEKEEEREKV KQQNHKVKSE SNEDIESRLP VASSGNGSTR STSP

Arabidopsis Description

WAT1-related protein At1g09380 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB4]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.