Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027469.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09310.1 | Bra027469.1-P | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93512 | Canola | cytosol | 76.09 | 99.29 |
| Bra030768.1-P | Field mustard | cytosol | 85.87 | 93.49 |
| AT1G09310.1 | Thale cress | cytosol | 83.7 | 86.03 |
| Bra027928.1-P | Field mustard | cytosol | 64.67 | 76.77 |
| Bra038157.1-P | Field mustard | cytosol | 69.02 | 76.51 |
| Bra038924.1-P | Field mustard | cytosol | 57.07 | 72.92 |
| KRH68428 | Soybean | cytosol | 50.0 | 55.76 |
| Bra010803.1-P | Field mustard | cytosol | 25.0 | 46.94 |
| Bra022026.1-P | Field mustard | cytosol | 34.24 | 44.68 |
| Bra025029.1-P | Field mustard | cytosol | 32.07 | 40.97 |
| Bra017568.1-P | Field mustard | cytosol | 31.52 | 40.28 |
| Bra019245.1-P | Field mustard | cytosol | 32.07 | 37.58 |
| Bra020626.1-P | Field mustard | cytosol | 33.15 | 35.67 |
| Bra013765.1-P | Field mustard | cytosol | 30.43 | 35.67 |
| Bra010024.1-P | Field mustard | cytosol | 32.61 | 35.09 |
Protein Annotations
| EnsemblPlants:Bra018568.1 | EnsemblPlants:Bra018568.1-P | EnsemblPlantsGene:Bra018568 | Gene3D:2.30.240.10 | InterPro:At5g01610-like | InterPro:DUF538 |
| InterPro:IPR036758 | PANTHER:PTHR31676 | PANTHER:PTHR31676:SF10 | PFAM:PF04398 | SEG:seg | SUPFAM:SSF141562 |
| UniParc:UPI000253E8A5 | UniProt:M4DPX7 | MapMan:35.2 | : | : | : |
Description
AT1G09310 (E=6e-066) | unknown protein
Coordinates
chrA06:+:3177995..3178549
Molecular Weight (calculated)
20525.6 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.471
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEAGYD RESGVVWLKQ KQSITHKFEN IDKLVSYGTE VTAVVKTGKI KKLTGVKAKE
101: LLIWVSVSEI YTEEKEKITF KSPTTLSRTF PVSAFIVPEE VEPAKEEPAK EKSSEATEEV TEEEPAKEAA KVEPAKEAVA VKEA
101: LLIWVSVSEI YTEEKEKITF KSPTTLSRTF PVSAFIVPEE VEPAKEEPAK EKSSEATEEV TEEEPAKEAA KVEPAKEAVA VKEA
001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEVGYD RESGVVWLKQ KKSITHKFTE IDKLVSYGTE VTAIVETGKI KKLTGVKAKE
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.