Factsheet for Bra019617.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00233	Canola	cytosol	100.0	100.0
AT5G61830.1	Thale cress	cytosol	88.61	88.61
Bra022746.1-P	Field mustard	cytosol	64.87	66.13
GSMUA_Achr4P15900_001	Banana	cytosol	61.39	61.39
EES04148	Sorghum	cytosol	60.76	59.26
Zm00001d042250_P001	Maize	cytosol	60.44	58.95
Os01t0929500-01	Rice	cytosol	61.39	58.79
HORVU3Hr1G096690.3	Barley	cytosol	59.81	58.7
TraesCS3A01G444300.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	58.54	57.45
TraesCS3D01G436600.1	Wheat	cytosol	58.54	57.45
TraesCS3B01G477700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	57.91	57.01
Bra032567.1-P	Field mustard	cytosol	17.72	47.86
Bra007472.1-P	Field mustard	cytosol, peroxisome, plastid	41.14	44.52
Bra032573.1-P	Field mustard	cytosol	18.35	43.28
Bra007585.1-P	Field mustard	cytosol	38.29	40.88
Bra014448.1-P	Field mustard	cytosol	37.34	39.73
Bra033230.1-P	Field mustard	cytosol	35.44	37.97

Protein Annotations

EnsemblPlants:Bra019617.1	EnsemblPlants:Bra019617.1-P	EnsemblPlantsGene:Bra019617	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43490	PANTHER:PTHR43490:SF54	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000253EF0A	UniProt:M4DSX4	MapMan:50.1.1	:	:

Description

AT5G61830 (E=4e-151) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA06:-:11727450..11728636

Molecular Weight (calculated)

35235.8 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.336

Length

316 amino acids

Sequence
(BLAST)

001: MTNKEKARER REKRMQEISL LRTIPYSDHQ RWWSSENVVA VVTGSNRGIG LEIARQLASH GLTLVLTARN VDAGLEAVTS LSLQQGLKVD FHQLDVTDAS
101: SIKEFGCWIK QTFGGLDILV NNAGVNYNLG SDNSVEFAET VVSTNYHGTK NMIKAMIPLM RPSPQGARIV NVSSRLGRVY GRRNRLANVE LRDQLSNPDS
201: LTEELLDRTV STFIEQVKDG TWESGGWPQT FTDYSISKLA VNAYTRMIAK ELSTRQEGEK IYVNSFCPGW VKTAMTGFAG NMSPEDAADT GVWLSLVLSE
301: EAVTGKFFAE RREINF

Best Arabidopsis Sequence Match ( AT5G61830.1 )
(BLAST)

001: MTNKEKARER REKRMQEISL LRTIPYSDHH RWWSCENVAV VTGSNRGIGF EIARQLAVHG LTVVLTARNV NAGLEAVKSL RHQEEGLKVY FHQLDVTDSS
101: SIREFGCWLK QTFGGLDILV NNAGVNYNLG SDNTVEFAET VISTNYQGTK NMTKAMIPLM RPSPHGARVV NVSSRLGRVN GRRNRLANVE LRDQLSSPDL
201: LTEELIDRTV SKFINQVKDG TWESGGWPQT FTDYSMSKLA VNAYTRLMAK ELERRGEEEK IYVNSFCPGW VKTAMTGYAG NMPPEDAADT GVWLSLVLSE
301: EAVTGKFFAE RREINF

Arabidopsis Description

At5g61830 [Source:UniProtKB/TrEMBL;Acc:Q501A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.