Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34930 | Canola | plastid | 100.0 | 98.27 |
| AT3G06780.1 | Thale cress | cytosol, nucleus, peroxisome | 83.53 | 70.65 |
| Bra029605.1-P | Field mustard | nucleus, vacuole | 80.0 | 70.1 |
| Bra001217.1-P | Field mustard | nucleus | 57.65 | 62.82 |
| VIT_05s0077g01850.t01 | Wine grape | cytosol | 52.94 | 47.62 |
| KRH50801 | Soybean | plastid | 43.53 | 40.66 |
| KRH02291 | Soybean | extracellular, plastid | 42.35 | 38.92 |
| PGSC0003DMT400044529 | Potato | plastid | 47.06 | 38.46 |
| Solyc07g055660.2.1 | Tomato | plastid | 35.29 | 36.81 |
Protein Annotations
Description
AT3G06780 (E=3e-020) | glycine-rich protein
Coordinates
chrA01:-:28069265..28069777
Molecular Weight (calculated)
18633.0 Da
IEP (calculated)
8.484
GRAVY (calculated)
-0.224
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSLIGADT VSVFTAKRGI AFGKSLLNRW DLTNHISFAV DAISSSPVRA SSYKTIRRIR KKRRTKRVSF GEDGGDFGRF LLEGDFIGGN DGPFGSGGGD
101: DGGGKGWNYG GGGWDESSSW SWSDPAMEFV YEVICWIALS NCVHFAFKRI VRIVTDGERE KLSLTLSPVC
101: DGGGKGWNYG GGGWDESSSW SWSDPAMEFV YEVICWIALS NCVHFAFKRI VRIVTDGERE KLSLTLSPVC
001: MEFSLIADTV TVCTAKQGIA FGKSLLQRLD LANHISFADS VVDHQSPGGG IVQASAIIFP VDAIAPPPVR SSSYKTIRRI RKKRRTRRVS FGGDGDDAGD
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
Arabidopsis Description
F3E22.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9M7Y4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.