Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74080 | Canola | endoplasmic reticulum, extracellular | 15.34 | 65.91 |
| CDY08034 | Canola | cytosol | 50.79 | 57.83 |
| PGSC0003DMT400044529 | Potato | plastid | 59.79 | 54.33 |
| AT3G06780.1 | Thale cress | cytosol, nucleus, peroxisome | 57.14 | 53.73 |
| Bra029605.1-P | Field mustard | nucleus, vacuole | 55.03 | 53.61 |
| Solyc07g055660.2.1 | Tomato | plastid | 46.03 | 53.37 |
| CDY24665 | Canola | nucleus, vacuole | 55.03 | 53.33 |
| CDY05293 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 56.08 | 53.0 |
| Bra040291.1-P | Field mustard | plastid | 47.62 | 52.94 |
| KRH50801 | Soybean | plastid | 50.79 | 52.75 |
| CDY34930 | Canola | plastid | 47.62 | 52.02 |
| KRH02291 | Soybean | extracellular, plastid | 49.74 | 50.81 |
| Bra001217.1-P | Field mustard | nucleus | 38.62 | 46.79 |
Protein Annotations
| EntrezGene:100244847 | wikigene:100244847 | MapMan:35.2 | EMBL:AM430323 | ProteinID:CAN69222 | ProteinID:CAN69222.1 |
| ProteinID:CBI22959 | ProteinID:CBI22959.3 | UniProt:D7SYA2 | EMBL:FN595246 | EntrezGene:LOC100244847 | wikigene:LOC100244847 |
| PANTHER:PTHR36751 | TIGR:TC54498 | UniParc:UPI0001BE1EB7 | ArrayExpress:VIT_05s0077g01850 | EnsemblPlantsGene:VIT_05s0077g01850 | EnsemblPlants:VIT_05s0077g01850.t01 |
| unigene:Vvi.14430 | RefSeq:XP_002272681 | RefSeq:XP_002272681.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:1458175..1459069
Molecular Weight (calculated)
20693.3 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.252
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MEICLIADTV SQGLSFAKIL LRGHNVVSNN HLSVFDSSEQ SSTAGVLQIS AMIFPVDALA PPPVRSNSCK TARRTSLRRK RRTRRRSLTG DSENGEDFGF
101: LGDGGDDGPF GGFGGGGRGW NFDRFGGHNW DESPSSSSDP AFDFVYEVIC WIALSNCVHF AFKRVVRIFA DDIGDASREK VPFRFASMC
101: LGDGGDDGPF GGFGGGGRGW NFDRFGGHNW DESPSSSSDP AFDFVYEVIC WIALSNCVHF AFKRVVRIFA DDIGDASREK VPFRFASMC
001: MEFSLIADTV TVCTAKQGIA FGKSLLQRLD LANHISFADS VVDHQSPGGG IVQASAIIFP VDAIAPPPVR SSSYKTIRRI RKKRRTRRVS FGGDGDDAGD
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
Arabidopsis Description
F3E22.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9M7Y4]
SUBAcon: [cytosol,nucleus,peroxisome]
SUBAcon: [cytosol,nucleus,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.