CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74080	Canola	endoplasmic reticulum, extracellular	21.5	97.73
CDY24665	Canola	nucleus, vacuole	92.5	94.87
CDY34930	Canola	plastid	71.0	82.08
CDY08034	Canola	cytosol	65.5	78.92
AT3G06780.1	Thale cress	cytosol, nucleus, peroxisome	76.5	76.12
VIT_05s0077g01850.t01	Wine grape	cytosol	53.0	56.08
KRH50801	Soybean	plastid	41.5	45.6
PGSC0003DMT400044529	Potato	plastid	46.5	44.71
KRH02291	Soybean	extracellular, plastid	41.0	44.32
Solyc07g055660.2.1	Tomato	plastid	35.5	43.56

Protein Annotations

EnsemblPlants:CDY05293	EnsemblPlantsGene:GSBRNA2T00120123001	PANTHER:PTHR36751	ProteinID:CDY05293	ProteinID:CDY05293.1	SEG:seg
UniParc:UPI0004EE6E8A	MapMan:35.2	:	:	:	:

Description

BnaC05g45100D

Coordinates

chrLK031960:+:915486..916197

Molecular Weight (calculated)

21182.0 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.074

Length

200 amino acids

Sequence
(BLAST)

001: MMELSLIVET VSAVCTAKQG VAFGSSLLLL NRWDSANHVS FTADSLVDQS PGGIVQASAA VIFPVDAIAP SPVRSSSYKT IRRIRKRRRT KRVSYGGDSE
101: DGGDFGRLLL EGGFGGSDGP FGFGGDGGGG KGWNYGGGGG GGSWDESSSS SWSDPAMEFV YEVICWIALS NCVHFAFKRI VRIVTDGERE KLNLTLSPVC

Best Arabidopsis Sequence Match ( AT3G06780.1 )
(BLAST)

001: MEFSLIADTV TVCTAKQGIA FGKSLLQRLD LANHISFADS VVDHQSPGGG IVQASAIIFP VDAIAPPPVR SSSYKTIRRI RKKRRTRRVS FGGDGDDAGD
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C

Arabidopsis Description

F3E22.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9M7Y4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.