Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74080 | Canola | endoplasmic reticulum, extracellular | 20.4 | 93.18 |
| Bra040291.1-P | Field mustard | plastid | 70.65 | 83.53 |
| CDY34930 | Canola | plastid | 71.14 | 82.66 |
| CDY08034 | Canola | cytosol | 67.66 | 81.93 |
| Bra029605.1-P | Field mustard | nucleus, vacuole | 74.63 | 77.32 |
| CDY24665 | Canola | nucleus, vacuole | 74.63 | 76.92 |
| CDY05293 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 76.12 | 76.5 |
| Bra001217.1-P | Field mustard | nucleus | 53.23 | 68.59 |
| VIT_05s0077g01850.t01 | Wine grape | cytosol | 53.73 | 57.14 |
| KRH50801 | Soybean | plastid | 42.79 | 47.25 |
| PGSC0003DMT400044529 | Potato | plastid | 47.76 | 46.15 |
| KRH02291 | Soybean | extracellular, plastid | 42.29 | 45.95 |
| Solyc07g055660.2.1 | Tomato | plastid | 36.32 | 44.79 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819863 | ProteinID:AAF63820.1 | ProteinID:AEE74458.1 | ArrayExpress:AT3G06780 | EnsemblPlantsGene:AT3G06780 |
| RefSeq:AT3G06780 | TAIR:AT3G06780 | RefSeq:AT3G06780-TAIR-G | EnsemblPlants:AT3G06780.1 | TAIR:AT3G06780.1 | Unigene:At.74889 |
| GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_566293.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR36751 | UniProt:Q9M7Y4 | UniParc:UPI00000A3E17 | SEG:seg | : |
Description
F3E22.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9M7Y4]
Coordinates
chr3:+:2143488..2144521
Molecular Weight (calculated)
21448.3 Da
IEP (calculated)
7.387
GRAVY (calculated)
-0.133
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSLIADTV TVCTAKQGIA FGKSLLQRLD LANHISFADS VVDHQSPGGG IVQASAIIFP VDAIAPPPVR SSSYKTIRRI RKKRRTRRVS FGGDGDDAGD
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
101: FGRFLLEGDF GGSDGPFGFG GGGNDGGGKG WNYGGGGGGF GRDNWDGSSF SSWSDPAMEF VYEVICWIAL SNCVHFAFKR IVRIVTDGER EKLNIALSPV
201: C
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.