CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034573.1-P	Field mustard	endoplasmic reticulum, nucleus, plastid	97.01	98.56
CDY28307	Canola	plastid	47.24	94.64
CDX68989	Canola	plastid	39.84	83.22
CDX72409	Canola	plastid	41.57	82.24
CDY46111	Canola	plastid	41.57	82.24
AT4G33580.2	Thale cress	plastid	38.74	81.46
GSMUA_Achr5P05560_001	Banana	plastid	19.37	65.08
CDX75366	Canola	plastid	39.69	62.38
KRH21767	Soybean	plastid	26.77	56.48
KRH10599	Soybean	plastid	26.46	55.63
CDY58271	Canola	cytosol	28.35	51.58
Zm00001d020764_P004	Maize	plastid	24.25	50.66
Os09t0464000-01	Rice	plastid	24.25	50.33
CDY64836	Canola	plastid	15.28	48.26
GSMUA_Achr9P15130_001	Banana	plastid	23.31	47.9
Zm00001d005920_P004	Maize	mitochondrion	23.78	46.75
CDX84518	Canola	plastid	32.44	45.88
TraesCS5A01G245700.2	Wheat	mitochondrion	22.2	44.48
HORVU5Hr1G069600.9	Barley	mitochondrion, plastid	22.68	44.44
TraesCS5B01G243100.2	Wheat	mitochondrion, plastid	22.52	44.27
TraesCS5D01G252400.3	Wheat	mitochondrion	22.36	44.24
CDX93638	Canola	cytosol	15.59	43.81
CDX85584	Canola	cytosol	17.32	42.47
CDX91024	Canola	cytosol	17.32	42.47
CDY61543	Canola	cytosol	17.17	42.08
CDY25799	Canola	cytosol	17.01	41.7
CDY28477	Canola	cytosol	17.01	41.7
CDY64834	Canola	cytosol	17.01	41.7
CDY69444	Canola	cytosol	16.85	41.47
CDX93637	Canola	cytosol	14.49	41.07
CDY47630	Canola	cytosol	15.12	40.85
CDY03752	Canola	cytosol	17.95	40.71
CDY57304	Canola	cytosol	17.95	40.71
CDY57847	Canola	plastid	17.64	40.0
CDY23811	Canola	mitochondrion, plastid	17.64	38.62
CDY46871	Canola	mitochondrion, plastid	17.64	38.36
OQU89631	Sorghum	plastid	27.72	35.92
CDY28672	Canola	plastid	17.8	32.85
CDY37516	Canola	plastid	16.85	31.01
CDY49059	Canola	plastid	15.75	26.25

Protein Annotations

KEGG:00910+4.2.1.1	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	Gene3D:3.40.1050.10	GO:A0A078IC54	UniProt:A0A078IC54
EnsemblPlants:CDY48445	ProteinID:CDY48445	ProteinID:CDY48445.1	InterPro:Carbonic_anhydrase	InterPro:Carbonic_anhydrase_CS	InterPro:Carbonic_anhydrase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004089	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008270	GO:GO:0015976	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00089485001	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036874	PFAM:PF00484	PFAM:PF13639	ScanProsite:PS00704	PFscan:PS50089
PFscan:PS51257	PANTHER:PTHR11002	PANTHER:PTHR11002:SF12	MetaCyc:PWY-241	MetaCyc:PWY-6142	MetaCyc:PWY-7115
MetaCyc:PWY-7117	SMART:SM00184	SMART:SM00947	SUPFAM:SSF53056	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0004EEC468	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaA08g11540DBnaA08g11540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC54]

Coordinates

chrLK032773:-:119017..123474

Molecular Weight (calculated)

71235.0 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.299

Length

635 amino acids

Sequence
(BLAST)

001: MSILHRFLSK DMTNTPYCGS VGCKEEHKAS DVCGPICYKE CPSICPNVDV TDLSPPPVIH HYIDENVKRI LIISTTSIIT TLFLLTLLVL CFKWYNRRRS
101: IALSRRWSME EARNWEFDGP SPVIVDHPVW HIRTIGLNPT VISSIKVCKY SKQDGVVEGT DCSVCLSEFE EEETLRLLPK CRHAFHVPCI DTWLRSHTNC
201: PVCRAPVVAV SGDDSEGVEE ILVRIPEEES GELDEETERG GEEEADEFFS IVVSDEEEEK SLQRVRRSVS LSSLSGLRVS EVVAAGRGKE KVKRGNVGSS
301: GRSSFLKRSI SYNAATLVKL KEFLQLILCF RYNRFFPFMA SSSPTHLSLS LDPSSSSSTS LLNLQRTISV SKDFEKTHLR IPVSFRKKAA NLQMMASGKT
401: PGLTQEATID REDNADVFDD MKHRFLAFKK HKYMDNLEHF KKLADAQAPK FLVIACADSR VCPSAILGFQ PGDAFTVRNI ANLVPSYESE PTETKAALEF
501: SVNTLNVENI LIIGHSRCGG IQALMSMQGE GDSRSFIHNW VKVGKKAKES TKAVASNLHF DHQCQHCEKA SINHSLERLL GYPWIEEKVR KGSLSLHGGY
601: YDFVNCTFEK WTVDYGESRG KKEGSGIAVK NRSVW

Best Arabidopsis Sequence Match ( AT4G33565.1 )
(BLAST)

001: MIDTVNLLLL TKLDSKERKQ KRENKNEDNS HLLFSFFFLF LHCLLIDDLE ARIMRFLHRF LLEDMPKETF SDSLCKNNCI QELKTLGYCS SYCLDECPSI
101: CEIVVISGLS PPAEIHHDDN LKRILIISAS SIITTLFLLT LLVLCFKFYY RRRRSITTSR RWSMEEARNW DFDGPAPVIV DHPIWHIRTI GLNPTVISSI
201: KVCQYSKKDG VVEGTDCSVC LSEFEEEETL RLLPKCKHAF HLYCIDTWLR SHTNCPLCRA PIVEANTMID DHSEGLEEIS VMIPEENGDD TDEEIEEERD
301: GFVSNISRDH GESQQQRVRR SVSLDSLSGL RVSEVVVGRE KEKLKRGNNI GSGRSSLLKR SISYSGK

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJ02]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.