CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39596	Sorghum	plasma membrane	1.97	0.24
EER95921	Sorghum	nucleus	1.32	0.14
KXG21396	Sorghum	plastid	0.66	0.11
EES12185	Sorghum	nucleus	0.0	0.0
KXG19082	Sorghum	nucleus	0.0	0.0
KXG20990	Sorghum	nucleus	0.0	0.0
KXG24184	Sorghum	nucleus	0.0	0.0
KXG31496	Sorghum	cytosol, extracellular	0.0	0.0
OQU82646	Sorghum	nucleus	0.0	0.0
OQU88240	Sorghum	cytosol	0.0	0.0
OQU90556	Sorghum	mitochondrion	0.0	0.0
OQU90997	Sorghum	nucleus	0.0	0.0
OQU92810	Sorghum	cytosol	0.0	0.0
OQU93136	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.8.50	MapMan:17.1.3.1.20	InterPro:30s_Rbsml_prot_S13_C	Gene3D:4.10.910.10	EntrezGene:8061179	UniProt:C5WY08
EnsemblPlants:EER90748	ProteinID:EER90748	ProteinID:EER90748.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	GO:GO:0042254
InterPro:IPR001892	InterPro:IPR027437	HAMAP:MF_01315	PFAM:PF00416	PIRSF:PIRSF002134	ScanProsite:PS00646
PFscan:PS50159	PANTHER:PTHR10871	PANTHER:PTHR10871:SF18	InterPro:Ribosomal_S13	InterPro:Ribosomal_S13-like_H2TH	InterPro:Ribosomal_S13_CS
EnsemblPlantsGene:SORBI_3001G058900	SUPFAM:SSF46946	unigene:Sbi.18058	UniParc:UPI00016F0426	RefSeq:XP_002463750.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:4439643..4441512

Molecular Weight (calculated)

17709.8 Da

IEP (calculated)

11.420

GRAVY (calculated)

-0.747

Length

152 amino acids

Sequence
(BLAST)

001: MSLIAGEDFQ HILRLLNTNV DGKQKIMFAM TSIKGVGRRF SNIVCKKADI DMNKRAGELT PEELERLMTV VANPRQFKVP DWFLNRKKDY KDGRFSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR

Best Arabidopsis Sequence Match ( AT1G22780.1 )
(BLAST)

001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR

Arabidopsis Description

RPS18B40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P34788]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.