CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008232_P001	Maize	cytosol	32.37	80.31
Zm00001d022583_P001	Maize	nucleus	61.21	69.43
TraesCS2D01G083000.1	Wheat	nucleus	40.05	49.23
TraesCS2B01G099800.1	Wheat	nucleus	40.05	48.55
TraesCS2A01G085100.1	Wheat	nucleus	39.29	48.45
KXG31496	Sorghum	cytosol, extracellular	4.79	36.19
KXG39596	Sorghum	plasma membrane	37.91	23.93
GSMUA_Achr6P32880_001	Banana	nucleus	29.97	22.45
OQU88240	Sorghum	cytosol	10.33	21.87
KXG24184	Sorghum	nucleus	20.03	15.57
KXG20990	Sorghum	nucleus	16.62	14.85
KXG21396	Sorghum	plastid	17.0	14.5
KXG19082	Sorghum	nucleus	15.37	13.38
OQU93136	Sorghum	cytosol	11.71	13.19
OQU82646	Sorghum	nucleus	20.15	11.74
OQU90997	Sorghum	nucleus	19.65	11.32
EES12185	Sorghum	nucleus	19.14	11.03
EER95921	Sorghum	nucleus	19.4	10.54
OQU92810	Sorghum	cytosol	11.96	10.11
EER90748	Sorghum	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.30	Gene3D:3.30.40.10	Gene3D:3.40.630.30	UniProt:A0A1W0W858	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008080	GO:GO:0016740	GO:GO:0046872
InterPro:IPR000182	InterPro:IPR013083	InterPro:IPR019787	InterPro:Jas	EnsemblPlants:OQU90556	ProteinID:OQU90556
ProteinID:OQU90556.1	PFAM:PF00583	PFAM:PF00628	PFAM:PF16135	PFscan:PS50016	PANTHER:PTHR42672
PANTHER:PTHR42672:SF9	SMART:SM00249	EnsemblPlantsGene:SORBI_3002G429900	SUPFAM:SSF55729	SUPFAM:SSF57903	UniParc:UPI0009DC8F10
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:77570587..77573587

Molecular Weight (calculated)

87873.4 Da

IEP (calculated)

7.257

GRAVY (calculated)

-0.467

Length

794 amino acids

Sequence
(BLAST)

001: MTVRKHLLAL GWTILSRPNA AMLTRLRYRA PGGYDAKSYC SLPDLVVDSA AASQFEFEFE QQEEEEDQII TVVNNNEPPP PPPQTKDEED DDEEDGPAEP
101: AEEEEQKEED DDQDAVIAEY IALMARNDGA SRGRRAGRLR DGAKRHLLAA GWTFWTKLKS NGREELRYRA PTGRSYISLH TACQAFKTSR RQAALPMTTA
201: SASASSASNS SSSSSKIDRR RVHATPATIL RAVRPSRVGD GDEDGGTIHC QPPVVMTIRK KRKLIGDGDA VNVTMKKIKK KETCCQVVGA DGTQLIKKSI
301: TTTTLTRKKR RRKEATASKN QTRVVLRPTN STASACQRRS RTLLSVLIDK DIVVPRDKVT YRAARDRPAA KDGFITGEGI RCTCCNKTLT VAEFAAHATA
401: RRGSDRREAW ARVFLKDGRS LSQCLVELMR RDVAVVAARN GDVRVKEKCS DPEGDSVCSI CNDGGDLLLC DNCPSAFHHA CVGLQATPEG DWFCPSCRCG
501: VCGGSDFDAT AAGGGGFTDK TIIYCDQCER EYHVGCVRRR GSEEEEESAA EWCRRPEEQE EWPWLCSPEC GEVFRHLQGL AAVARERSIP IPTTVPTTVE
601: GVSLSILRRR RRRPISMVAT GSGCQEEEEE EDAAEHGQLC SALDVLHECF VTLIEPRTQT DLTADIVFNR ESELRRLNFR GYYVVGLEKA GELITVGTLR
701: VLGTEVAELP LVGTRFAHRR QGMCHLLVTE LEKVLRQVGV RRLVLPAVPE LLPMWTASLG FHPMTRSDVM EIAAEHAILS FQGTTMCHKS LHLA

Best Arabidopsis Sequence Match ( AT5G58610.4 )
(BLAST)

001: MLGVIEDNLK ITIDQFLHDF DAERYPQLKL LNEASQAVYE TNACLSGMLT IAPQEHQFSC IDKDFKPASQ RCQSLSVLTS VSGIRSEASD INKATEISSK
101: KSTAAHKKDI LHKKPGIWHP FDCLAKSGPQ AVSSFIRSPL LPMAMHVRMH LKYMGWTIEH MVDEAGRQRF RYLSPNGRLK EHSLRQVCFR LKQPDKSLTT
201: PGMANPPSLS SENQTYSTQE MRSIVLALPA FNRSVALGEG LKLSTDTLLE YETQGNEEVF TRESRNFCPK KAFPGQKETL RVRIEPKTKA QGIILRLKSK
301: RKQTPKKDEV IVGLQNVNRS MRRGHTSKKL MDIKNRVTSR GKTRVLRSRK RAQRVITPIS RKHSPRNILS WLMDNNVVLP RENIRCCNQK DTTVRKEGKL
401: TREGIKCSCC RRVFTINGFE VHANGASCSG AANIFLDDGR SLLECQVEAY KKRKKAQPPD MLKMKLRQGE NDVFCSVCHY GGKLILCDGC PSAFHANCLG
501: LEDVPDGDWF CQSCCCGACG QFFLKTTSTN AKEEKFISCK QCELKYHPSC LRYDGACDSL DKILGEKWFC SKDCEEIFVI LYDLIGKPRE VSVEKLTWRL
601: VQSLEPNMYG DDASKIEAAA ENHCILSVAL DVMHELFEPV KRPHGGRDLA EDVIFSRWSK FKRLNFSGFY TVLLERNNEL VSVATVRILG KKVAEMPFIG
701: TRFQHRQRGM CRVLINELEK VLIDLGVERL VLPAVPCVLN TWINSFGFTK MTISERKNFL KFTLLEFGRT ILCEKILIKS GVADPIPSIA SLGEQQCDIL
801: RIEDNSASDD GSEVHQAEQH LEESRSTKNP PEEIKTQEER LLIKKENRIV KFYSRRRSKC MRLT

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LUZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.