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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029602_P001 Maize cytosol, mitochondrion, nucleus, plastid 75.32 81.57
Os03t0445700-01 Rice cytosol, mitochondrion, plastid 70.64 81.37
EER97470 Sorghum cytosol, nucleus, plastid 59.15 64.95
KXG38039 Sorghum mitochondrion, nucleus, plastid 43.83 41.7
EES02556 Sorghum mitochondrion 37.45 29.63
KXG22356 Sorghum plastid 34.89 24.7
OQU92400 Sorghum mitochondrion, nucleus, plastid 34.47 24.7
KXG22716 Sorghum plastid 38.3 21.9
Protein Annotations
EnsemblPlants:EER92081EnsemblPlantsGene:SORBI_3001G328500EntrezGene:8063213InterPro:IPR004883InterPro:LOBPANTHER:PTHR31304
PANTHER:PTHR31304:SF1PFAM:PF03195PFscan:PS50891ProteinID:EER92081ProteinID:EER92081.1RefSeq:XP_002465083.1
SEG:segunigene:Sbi.11788UniParc:UPI0001A81FEDUniProt:C5WVK7MapMan:15.5.24:
Description
hypothetical protein
Coordinates
chr1:+:61604153..61605690
Molecular Weight (calculated)
23702.2 Da
IEP (calculated)
7.994
GRAVY (calculated)
-0.029
Length
235 amino acids
Sequence
(BLAST)
001: MSCNGCRVLR KGCSEACVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT
101: VLRGGAIGPL PELGITGSAG DLYGPPGAGT GHGGGGGKRA GGWSTFSTAK RVRKAAATGA PPPPPAAEPE ASCDLGLCLL SPGSPPPPAG DRRAPFMRPG
201: TPSITSDDDS VTTTTTTTTT GGGGDREPVL LNLFA
Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.