CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	75.3	78.91
Os01t0511000-01	Rice	cytosol, nucleus, plastid	35.98	63.44
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	45.73	53.19
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	46.04	51.19
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	46.04	50.84
AT1G68510.1	Thale cress	mitochondrion, nucleus	34.45	48.5
CDY38588	Canola	cytosol, mitochondrion, nucleus	34.45	47.08
Bra004315.1-P	Field mustard	mitochondrion	33.84	46.84
CDX96013	Canola	mitochondrion	33.84	46.84
KRH45269	Soybean	nucleus	30.49	45.66
TraesCS5A01G529400.1	Wheat	nucleus	37.2	45.52
PGSC0003DMT400037711	Potato	mitochondrion	34.45	44.66
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	38.72	43.94
Solyc05g009320.2.1	Tomato	mitochondrion	33.54	43.31
KRG90816	Soybean	nucleus	28.96	42.41
EES02556	Sorghum	mitochondrion	38.11	42.09
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	30.79	41.91
KXG22356	Sorghum	plastid	41.77	41.27
EER97470	Sorghum	cytosol, nucleus, plastid	25.91	39.72
EER92081	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.7	34.47
KXG22716	Sorghum	plastid	42.68	34.06
KXG38039	Sorghum	mitochondrion, nucleus, plastid	23.78	31.58

Protein Annotations

EnsemblPlants:OQU92400	EnsemblPlantsGene:SORBI_3001G338600	EntrezGene:8069839	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:OQU92400	ProteinID:OQU92400.1	RefSeq:XP_002465135.1
SEG:seg	UniParc:UPI0001A82073	UniProt:A0A1Z5S8Y3	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr1:+:62623592..62625626

Molecular Weight (calculated)

35575.3 Da

IEP (calculated)

6.464

GRAVY (calculated)

-0.616

Length

328 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAA QDHLRPAVFR SLLYEACGRI VNPVYGSVGL LWSGQWHACQ
101: AAVEAVLKGQ PVVQVDAAAA PPLMLGGRRF DIRHVAKDPD AAAAADLLRV ARGRKRAASS SCTSSKPSGN KQRRASTGDN DEPLTRRPGQ EAEEEPEPVV
201: EHDHGHDEES AGSHDHHHHH LQAQQQGSEE DTDVEAASHS HSHSHSHSHV SQAEPELQSH APPVSSTQQH ADEDDEEEEV GLELTLGLEP LVRQRQQQQP
301: KSSRYDDHSG LSLSAASSLI CLRLQLPA

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.