Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96013 | Canola | mitochondrion | 94.58 | 95.78 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 87.08 | 89.7 |
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 30.0 | 79.12 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 32.5 | 52.7 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 38.33 | 49.46 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 45.83 | 47.01 |
| CDY34735 | Canola | nucleus | 36.25 | 46.28 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 44.58 | 44.4 |
| KRH45269 | Soybean | nucleus | 40.0 | 43.84 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 45.83 | 43.48 |
| CDY12617 | Canola | mitochondrion | 44.58 | 43.32 |
| CDY42342 | Canola | mitochondrion | 44.58 | 43.32 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 45.83 | 43.31 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 42.92 | 42.92 |
| CDX74249 | Canola | nucleus | 45.83 | 42.31 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 44.17 | 42.23 |
| KRG90816 | Soybean | nucleus | 39.17 | 41.96 |
| CDX91999 | Canola | nucleus | 45.42 | 41.92 |
| TraesCS3B01G106900.1 | Wheat | cytosol, mitochondrion, nucleus | 47.92 | 38.98 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 45.0 | 38.3 |
| TraesCS4D01G354200.1 | Wheat | nucleus | 42.5 | 37.09 |
| EES02556 | Sorghum | mitochondrion | 45.83 | 37.04 |
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 45.42 | 36.7 |
| Zm00001d040004_P001 | Maize | mitochondrion | 45.42 | 36.58 |
| Zm00001d010749_P001 | Maize | plastid | 42.92 | 36.4 |
| TraesCS5A01G529400.1 | Wheat | nucleus | 40.42 | 36.19 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 43.33 | 35.49 |
| TraesCS4B01G361200.1 | Wheat | nucleus | 40.83 | 35.38 |
| CDY17741 | Canola | nucleus | 32.08 | 35.16 |
| CDX69315 | Canola | nucleus | 32.5 | 34.98 |
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 42.08 | 34.95 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 43.33 | 34.67 |
| TraesCS4D01G354100.1 | Wheat | cytosol, nucleus, plastid | 42.92 | 34.56 |
| CDY37852 | Canola | nucleus | 31.25 | 34.56 |
| CDY58550 | Canola | nucleus | 31.25 | 34.56 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 45.0 | 34.5 |
| OQU92400 | Sorghum | mitochondrion, nucleus, plastid | 47.08 | 34.45 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 44.17 | 33.87 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 45.0 | 33.75 |
| CDY43575 | Canola | nucleus | 30.83 | 33.48 |
| CDY29564 | Canola | nucleus | 32.08 | 33.19 |
| CDX75662 | Canola | nucleus | 32.5 | 32.91 |
| CDY02101 | Canola | nucleus | 32.92 | 32.78 |
| CDX72636 | Canola | mitochondrion, nucleus | 31.67 | 32.76 |
| CDY67844 | Canola | nucleus | 30.83 | 32.6 |
| CDY67455 | Canola | nucleus | 30.83 | 32.46 |
| KXG22356 | Sorghum | plastid | 44.58 | 32.23 |
| CDY23026 | Canola | nucleus | 32.08 | 32.08 |
| CDX81315 | Canola | nucleus | 30.83 | 31.36 |
| CDX81265 | Canola | nucleus | 30.83 | 31.09 |
| KXG22716 | Sorghum | plastid | 44.58 | 26.03 |
Protein Annotations
| EnsemblPlants:CDY38588 | EnsemblPlantsGene:GSBRNA2T00066271001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF7 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY38588 | ProteinID:CDY38588.1 | UniParc:UPI0004EDE29F | UniProt:A0A078HP88 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC06g30110DBnaC06g30110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP88]
Coordinates
chrLK032427:+:131783..133066
Molecular Weight (calculated)
26068.9 Da
IEP (calculated)
8.163
GRAVY (calculated)
-0.358
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQHAAANA TLFLAKFYGR AGLLNLIESG PNHLRPAIFR SLLYEACGRI VNPVDGSVGL MWSGNWSQCQ
101: AAVDAILNGL PITHTPLASA SASHQIIPPH RTYDIRHVAK DPTTGGDSSE SLALAPRVNG NKAKTKTGRL KRLAETVDFQ LGECSHDTWQ LQCSGATHGY
201: GQLALENVEN RREAPLNQSS NLGRDDQVDT NEVGLELRLG
101: AAVDAILNGL PITHTPLASA SASHQIIPPH RTYDIRHVAK DPTTGGDSSE SLALAPRVNG NKAKTKTGRL KRLAETVDFQ LGECSHDTWQ LQCSGATHGY
201: GQLALENVEN RREAPLNQSS NLGRDDQVDT NEVGLELRLG
001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
Arabidopsis Description
LBD42LBD42 [Source:UniProtKB/TrEMBL;Acc:A0A178W6D5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.