Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011772.1-P | Field mustard | nucleus | 85.2 | 80.17 |
| CDX75662 | Canola | nucleus | 85.2 | 80.17 |
| CDX81265 | Canola | nucleus | 83.41 | 78.15 |
| CDX72636 | Canola | mitochondrion, nucleus | 78.03 | 75.0 |
| CDY29564 | Canola | nucleus | 77.13 | 74.14 |
| AT4G37540.1 | Thale cress | nucleus | 74.89 | 69.58 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 53.36 | 62.63 |
| PGSC0003DMT400064185 | Potato | nucleus | 59.19 | 62.26 |
| CDY58550 | Canola | nucleus | 60.09 | 61.75 |
| CDY37852 | Canola | nucleus | 59.64 | 61.29 |
| Solyc02g092550.2.1 | Tomato | extracellular | 58.74 | 60.09 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 60.99 | 59.65 |
| CDY43575 | Canola | nucleus | 58.74 | 59.28 |
| CDY67455 | Canola | nucleus | 60.54 | 59.21 |
| CDY67844 | Canola | nucleus | 60.09 | 59.03 |
| KRH58049 | Soybean | mitochondrion, nucleus | 60.09 | 59.03 |
| CDY17741 | Canola | nucleus | 57.85 | 58.9 |
| KRH04451 | Soybean | nucleus | 60.54 | 58.7 |
| KRH28374 | Soybean | nucleus | 62.33 | 57.92 |
| KRH77108 | Soybean | nucleus | 62.33 | 57.2 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 52.02 | 55.77 |
| CDX81315 | Canola | nucleus | 57.85 | 54.66 |
| CDY02101 | Canola | nucleus | 58.74 | 54.36 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 51.57 | 54.25 |
| CDY23026 | Canola | nucleus | 58.3 | 54.17 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 44.39 | 53.8 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 52.02 | 53.7 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 47.98 | 51.2 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 45.29 | 48.1 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 29.6 | 44.59 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 44.84 | 43.48 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 44.39 | 43.04 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 43.95 | 42.98 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 44.84 | 42.92 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 43.95 | 42.24 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 43.05 | 38.87 |
| CDY34735 | Canola | nucleus | 31.39 | 37.23 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 41.7 | 37.05 |
| CDY12617 | Canola | mitochondrion | 40.36 | 36.44 |
| CDY42342 | Canola | mitochondrion | 40.36 | 36.44 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 34.98 | 32.5 |
| CDX96013 | Canola | mitochondrion | 34.08 | 32.07 |
| CDX91999 | Canola | nucleus | 36.77 | 31.54 |
| CDX74249 | Canola | nucleus | 36.77 | 31.54 |
Protein Annotations
| EnsemblPlants:CDX69315 | EnsemblPlantsGene:GSBRNA2T00131148001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX69315 | ProteinID:CDX69315.1 | SEG:seg | UniParc:UPI0004EDD183 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC01g01380D
Coordinates
chrLK031789:-:4089170..4090242
Molecular Weight (calculated)
24362.0 Da
IEP (calculated)
7.999
GRAVY (calculated)
-0.345
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPEPNR PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET
101: VLRGGTLRPI SDLHESPSLN SSDESTEIWR MQRPEGSRKE SLVNRKRSKT ERSDPELNHG LALTGPVVPA PFLPPPPFSK AVNGDHPGSP SEESVTTTSC
201: YEYGISGDGY GNKRERKLLN LFV
101: VLRGGTLRPI SDLHESPSLN SSDESTEIWR MQRPEGSRKE SLVNRKRSKT ERSDPELNHG LALTGPVVPA PFLPPPPFSK AVNGDHPGSP SEESVTTTSC
201: YEYGISGDGY GNKRERKLLN LFV
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
Arabidopsis Description
LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.