Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g092550.2.1 | Tomato | extracellular | 94.34 | 91.74 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 59.43 | 66.32 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 71.23 | 66.23 |
| CDY58550 | Canola | nucleus | 63.21 | 61.75 |
| KRH04451 | Soybean | nucleus | 66.98 | 61.74 |
| CDY17741 | Canola | nucleus | 63.68 | 61.64 |
| CDY43575 | Canola | nucleus | 64.15 | 61.54 |
| CDY37852 | Canola | nucleus | 62.74 | 61.29 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 62.26 | 61.11 |
| KRH28374 | Soybean | nucleus | 68.87 | 60.83 |
| CDY67844 | Canola | nucleus | 65.09 | 60.79 |
| KRH58049 | Soybean | mitochondrion, nucleus | 65.09 | 60.79 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 59.43 | 60.58 |
| KRH77108 | Soybean | nucleus | 69.34 | 60.49 |
| CDY67455 | Canola | nucleus | 64.62 | 60.09 |
| CDX69315 | Canola | nucleus | 62.26 | 59.19 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 50.47 | 58.15 |
| Bra037847.1-P | Field mustard | nucleus | 63.68 | 57.2 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 58.49 | 57.14 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 57.08 | 57.08 |
| Bra031833.1-P | Field mustard | nucleus | 64.62 | 56.85 |
| CDX75662 | Canola | nucleus | 62.74 | 56.12 |
| Bra011772.1-P | Field mustard | nucleus | 62.74 | 56.12 |
| CDY29564 | Canola | nucleus | 61.32 | 56.03 |
| Bra012913.1-P | Field mustard | nucleus | 63.68 | 56.02 |
| CDY23026 | Canola | nucleus | 63.21 | 55.83 |
| CDX72636 | Canola | mitochondrion, nucleus | 60.85 | 55.6 |
| Bra017831.1-P | Field mustard | nucleus | 60.85 | 55.6 |
| CDY02101 | Canola | nucleus | 63.21 | 55.6 |
| AT5G67420.2 | Thale cress | nucleus | 65.57 | 55.6 |
| Bra036040.1-P | Field mustard | nucleus | 64.15 | 55.51 |
| CDX81315 | Canola | nucleus | 61.79 | 55.51 |
| AT3G49940.1 | Thale cress | nucleus | 64.62 | 55.47 |
| Bra012164.1-P | Field mustard | nucleus | 65.57 | 54.3 |
| AT4G37540.1 | Thale cress | nucleus | 61.32 | 54.17 |
| CDX81265 | Canola | nucleus | 59.43 | 52.94 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 50.94 | 51.67 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 47.17 | 47.62 |
| PGSC0003DMT400055393 | Potato | nucleus | 45.75 | 47.55 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 46.7 | 42.67 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 46.23 | 42.61 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 45.75 | 42.54 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 45.75 | 42.17 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 46.23 | 42.06 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 46.23 | 39.68 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 45.75 | 38.65 |
| PGSC0003DMT400014630 | Potato | mitochondrion, nucleus, plastid | 38.21 | 33.2 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 39.15 | 32.81 |
| PGSC0003DMT400032938 | Potato | mitochondrion | 39.62 | 30.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400064185 | EnsemblPlantsGene:PGSC0003DMG400024936 | EntrezGene:102592166 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400024936 | RefSeq:XP_006339815.1 | UniParc:UPI00018DFDD9 |
| UniProt:M1CBV8 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024936]
Coordinates
chr2:+:42995042..42996163
Molecular Weight (calculated)
23376.9 Da
IEP (calculated)
6.498
GRAVY (calculated)
-0.231
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET
101: VLRGGALRPI SEFLGASVEI DEVSDCTDVF KLQDPRKMQK RRRFPEETSM LADLDLSLTP GFNQKVYNSH PLPENHRRPG TPSMNSEESG TTTCFESTAV
201: IGEEPKLLSL FN
101: VLRGGALRPI SEFLGASVEI DEVSDCTDVF KLQDPRKMQK RRRFPEETSM LADLDLSLTP GFNQKVYNSH PLPENHRRPG TPSMNSEESG TTTCFESTAV
201: IGEEPKLLSL FN
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.