Factsheet for Bra012164.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67455	Canola	nucleus	88.28	99.12
CDY67844	Canola	nucleus	87.11	98.24
Bra031833.1-P	Field mustard	nucleus	85.55	90.87
Bra037847.1-P	Field mustard	nucleus	83.59	90.68
AT5G67420.2	Thale cress	nucleus	87.89	90.0
Bra036040.1-P	Field mustard	nucleus	73.44	76.73
Bra012913.1-P	Field mustard	nucleus	71.88	76.35
GSMUA_Achr3P18860_001	Banana	cytosol	49.22	66.32
PGSC0003DMT400064185	Potato	nucleus	54.3	65.57
Solyc02g092550.2.1	Tomato	extracellular	54.3	63.76
GSMUA_Achr4P14150_001	Banana	mitochondrion	51.95	61.57
GSMUA_Achr3P30130_001	Banana	nucleus	50.0	61.54
Bra011772.1-P	Field mustard	nucleus	54.69	59.07
GSMUA_Achr7P26260_001	Banana	mitochondrion	48.83	58.96
GSMUA_Achr6P07770_001	Banana	mitochondrion	41.8	58.15
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	46.48	56.94
Bra017831.1-P	Field mustard	nucleus	51.56	56.9
GSMUA_Achr4P32550_001	Banana	mitochondrion	43.36	52.86
Os03t0609500-01	Rice	cytosol, nucleus, plastid	41.8	46.12
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	41.8	45.92
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	41.02	45.65
TraesCS4B01G078800.1	Wheat	nucleus	40.62	45.22
HORVU4Hr1G013380.2	Barley	nucleus	40.23	45.18
KXG38039	Sorghum	mitochondrion, nucleus, plastid	42.58	44.13
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	39.84	40.64
Bra021433.1-P	Field mustard	nucleus	32.42	31.44
Bra004315.1-P	Field mustard	mitochondrion	28.91	31.22

Protein Annotations

EnsemblPlants:Bra012164.1	EnsemblPlants:Bra012164.1-P	EnsemblPlantsGene:Bra012164	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000254168A	UniProt:M4D6Q4
MapMan:15.5.24	:	:	:	:	:

Description

AT5G67420 (E=3e-106) LBD37 | LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)

Coordinates

chrA07:+:9636805..9637668

Molecular Weight (calculated)

27869.8 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.398

Length

256 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNVCQAAVET
101: VLRGGSLRPI PELLAHGGGF AGFPTATSEE ASEICTEMLN LQQNDGSSDR NIYHHSRFSS SRTRSRLDSS PTKRKRVACS EQQPSSELDL SLIPNYPIKT
201: TPSSTRQRSR TPSMNSEESV TTTTTTPTSF WDNTATRGDT YGNGGGETSK LLNLFV

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.