Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 79.74 | 80.43 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 78.88 | 79.57 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 78.02 | 79.39 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 79.31 | 78.97 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 78.45 | 73.68 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 72.41 | 66.93 |
| KRH05602 | Soybean | nucleus | 15.09 | 57.38 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 49.57 | 55.02 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 44.4 | 49.05 |
| CDY58550 | Canola | nucleus | 45.69 | 48.85 |
| CDY37852 | Canola | nucleus | 45.69 | 48.85 |
| Os03t0445700-01 | Rice | cytosol, mitochondrion, plastid | 41.81 | 47.55 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 34.91 | 47.37 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 34.91 | 47.37 |
| CDY67844 | Canola | nucleus | 46.12 | 47.14 |
| CDY67455 | Canola | nucleus | 46.12 | 46.93 |
| PGSC0003DMT400064185 | Potato | nucleus | 42.67 | 46.7 |
| KRH58049 | Soybean | mitochondrion, nucleus | 45.69 | 46.7 |
| CDY43575 | Canola | nucleus | 44.4 | 46.61 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 45.69 | 46.49 |
| KRH04451 | Soybean | nucleus | 45.69 | 46.09 |
| Solyc02g092550.2.1 | Tomato | extracellular | 43.1 | 45.87 |
| CDY17741 | Canola | nucleus | 43.1 | 45.66 |
| KRH15442 | Soybean | mitochondrion, nucleus | 32.76 | 44.44 |
| Bra031833.1-P | Field mustard | nucleus | 46.12 | 44.4 |
| CDX69315 | Canola | nucleus | 42.24 | 43.95 |
| Os07t0589000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 42.67 | 43.81 |
| KRH28374 | Soybean | nucleus | 45.26 | 43.75 |
| Bra037847.1-P | Field mustard | nucleus | 44.4 | 43.64 |
| CDX81315 | Canola | nucleus | 44.4 | 43.64 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 36.64 | 43.59 |
| AT5G67420.2 | Thale cress | nucleus | 46.12 | 42.8 |
| KRH77108 | Soybean | nucleus | 44.83 | 42.8 |
| KRH61393 | Soybean | nucleus | 33.62 | 42.16 |
| Bra036040.1-P | Field mustard | nucleus | 44.4 | 42.04 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 39.22 | 41.94 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 39.22 | 41.94 |
| Bra012164.1-P | Field mustard | nucleus | 46.12 | 41.8 |
| CDY23026 | Canola | nucleus | 43.1 | 41.67 |
| Bra012913.1-P | Field mustard | nucleus | 43.1 | 41.49 |
| AT3G49940.1 | Thale cress | nucleus | 43.97 | 41.3 |
| CDY02101 | Canola | nucleus | 42.67 | 41.08 |
| Bra011772.1-P | Field mustard | nucleus | 41.81 | 40.93 |
| CDX75662 | Canola | nucleus | 41.81 | 40.93 |
| AT4G37540.1 | Thale cress | nucleus | 42.24 | 40.83 |
| Bra017831.1-P | Field mustard | nucleus | 40.52 | 40.52 |
| CDY29564 | Canola | nucleus | 40.52 | 40.52 |
| PGSC0003DMT400055393 | Potato | nucleus | 34.91 | 39.71 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 34.91 | 39.71 |
| CDX72636 | Canola | mitochondrion, nucleus | 39.66 | 39.66 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 31.47 | 39.25 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 37.5 | 39.19 |
| CDX81265 | Canola | nucleus | 40.09 | 39.08 |
| KRH05603 | Soybean | cytosol, extracellular | 15.95 | 34.91 |
| Os01t0129600-00 | Rice | cytosol | 24.14 | 16.52 |
Protein Annotations
| EnsemblPlants:Os03t0609500-01 | EnsemblPlantsGene:Os03g0609500 | EntrezGene:4333430 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AAR87344.1 | ProteinID:ABF97569.1 | ProteinID:BAF12562.1 |
| ProteinID:BAS85248.1 | RefSeq:XP_015628211.1 | SEG:seg | UniParc:UPI000022DFC6 | UniProt:Q75HN5 | MapMan:15.5.24 |
Description
LATERAL ORGAN BOUNDARIES DOMAIN 38, lateral organ boundaries domain protein 38Similar to LOB domain protein 39. (Os03t0609500-01)
Coordinates
chr3:-:22976955..22979863
Molecular Weight (calculated)
23619.8 Da
IEP (calculated)
6.485
GRAVY (calculated)
0.023
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA
101: VLRGDSLRAL SAVPAAFTDR DMAGLYGNVG AAAGTSSSSP DNDNSSASAA PRRKRPRNNG AGAGVGQQQL PHAVAAVLQS CELDLCLTPV SPPAVQLVGG
201: GGGASDEHST TTCEEASDGD GAGAPTLLNL FS
101: VLRGDSLRAL SAVPAAFTDR DMAGLYGNVG AAAGTSSSSP DNDNSSASAA PRRKRPRNNG AGAGVGQQQL PHAVAAVLQS CELDLCLTPV SPPAVQLVGG
201: GGGASDEHST TTCEEASDGD GAGAPTLLNL FS
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.