Factsheet for Bra037847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81315	Canola	nucleus	95.34	95.34
Bra031833.1-P	Field mustard	nucleus	86.02	84.23
Bra012164.1-P	Field mustard	nucleus	90.68	83.59
AT5G67420.2	Thale cress	nucleus	86.44	81.6
Bra012913.1-P	Field mustard	nucleus	72.46	70.95
Bra036040.1-P	Field mustard	nucleus	72.88	70.2
GSMUA_Achr3P18860_001	Banana	cytosol	52.54	65.26
PGSC0003DMT400064185	Potato	nucleus	57.2	63.68
Solyc02g092550.2.1	Tomato	extracellular	57.63	62.39
GSMUA_Achr3P30130_001	Banana	nucleus	52.54	59.62
Bra011772.1-P	Field mustard	nucleus	59.75	59.49
GSMUA_Achr4P14150_001	Banana	mitochondrion	53.39	58.33
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.69	57.55
GSMUA_Achr6P07770_001	Banana	mitochondrion	43.64	55.98
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	48.73	55.02
Bra017831.1-P	Field mustard	nucleus	53.81	54.74
GSMUA_Achr4P32550_001	Banana	mitochondrion	46.61	52.38
Os03t0609500-01	Rice	cytosol, nucleus, plastid	43.64	44.4
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	42.8	43.91
TraesCS4B01G078800.1	Wheat	nucleus	42.8	43.91
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	43.22	43.78
HORVU4Hr1G013380.2	Barley	nucleus	41.95	43.42
KXG38039	Sorghum	mitochondrion, nucleus, plastid	44.92	42.91
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	42.37	39.84
Bra021433.1-P	Field mustard	nucleus	34.32	30.68
Bra004315.1-P	Field mustard	mitochondrion	30.51	30.38

Protein Annotations

EnsemblPlants:Bra037847.1	EnsemblPlants:Bra037847.1-P	EnsemblPlantsGene:Bra037847	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002541BBD	UniProt:M4F9T3
MapMan:15.5.24	:	:	:	:	:

Description

AT5G67420 (E=3e-081) LBD37 | LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)

Coordinates

chrA09:+:3873152..3873956

Molecular Weight (calculated)

25720.5 Da

IEP (calculated)

8.783

GRAVY (calculated)

-0.333

Length

236 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WKVCQAAVET
101: VLRGGSLRPI PELLTHGGGF PSATSEEASE ICTEMLKLQQ NDGSSDRNIY HHSRFSSSRS RSTLDSSPRK RKLEISLNPS LPMKAVPSST RQRSRTPSMN
201: SEESVTTTTT FWDNFASGAQ HGNGGGETSR LLNLFV

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.