Factsheet for Bra031833.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37852	Canola	nucleus	90.04	100.0
CDY58550	Canola	nucleus	88.38	98.16
CDY43575	Canola	nucleus	84.65	92.31
Bra037847.1-P	Field mustard	nucleus	84.23	86.02
Bra012164.1-P	Field mustard	nucleus	90.87	85.55
AT5G67420.2	Thale cress	nucleus	85.89	82.8
Bra036040.1-P	Field mustard	nucleus	73.44	72.24
Bra012913.1-P	Field mustard	nucleus	71.78	71.78
GSMUA_Achr3P18860_001	Banana	cytosol	51.45	65.26
PGSC0003DMT400064185	Potato	nucleus	56.85	64.62
Solyc02g092550.2.1	Tomato	extracellular	56.85	62.84
GSMUA_Achr3P30130_001	Banana	nucleus	51.87	60.1
GSMUA_Achr4P14150_001	Banana	mitochondrion	53.53	59.72
Bra011772.1-P	Field mustard	nucleus	57.26	58.23
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.04	58.02
GSMUA_Achr6P07770_001	Banana	mitochondrion	43.57	57.07
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	47.72	55.02
Bra017831.1-P	Field mustard	nucleus	52.7	54.74
GSMUA_Achr4P32550_001	Banana	mitochondrion	46.06	52.86
Os03t0609500-01	Rice	cytosol, nucleus, plastid	44.4	46.12
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	42.74	44.78
HORVU4Hr1G013380.2	Barley	nucleus	42.32	44.74
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	43.15	44.64
TraesCS4B01G078800.1	Wheat	nucleus	42.32	44.35
KXG38039	Sorghum	mitochondrion, nucleus, plastid	44.81	43.72
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	41.91	40.24
Bra004315.1-P	Field mustard	mitochondrion	30.29	30.8
Bra021433.1-P	Field mustard	nucleus	33.61	30.68

Protein Annotations

EnsemblPlants:Bra031833.1	EnsemblPlants:Bra031833.1-P	EnsemblPlantsGene:Bra031833	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002546ADD	UniProt:M4ESQ3
MapMan:15.5.24	:	:	:	:	:

Description

AT5G67420 (E=4e-092) LBD37 | LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)

Coordinates

chrA02:+:27641733..27642526

Molecular Weight (calculated)

25986.6 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.337

Length

241 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPEPQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLAHGGGF AGFPSEEGSE ICTGMLNLND GSSDRNIYHH SRFSSSRSRS TLDSSAKKRK RVDSSELDLS LNPNLSTKTT PSPTRQRSGT
201: PSMNSEESVA TTTSFWDATA TGERYGNGGG GETRQLLNLF V

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.