CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0609500-01	Rice	cytosol, nucleus, plastid	73.68	78.45
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	72.47	77.83
HORVU4Hr1G013380.2	Barley	nucleus	71.66	77.63
TraesCS4B01G078800.1	Wheat	nucleus	72.06	77.39
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	72.47	76.82
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	73.28	72.11
KRH05602	Soybean	nucleus	14.17	57.38
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	46.15	54.55
GSMUA_Achr4P32550_001	Banana	mitochondrion	42.51	50.0
CDY58550	Canola	nucleus	43.32	49.31
CDY37852	Canola	nucleus	43.32	49.31
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	33.6	48.54
KRH35680	Soybean	cytosol, mitochondrion, nucleus	33.6	48.54
CDY67844	Canola	nucleus	43.72	47.58
CDY43575	Canola	nucleus	42.51	47.51
CDY67455	Canola	nucleus	43.72	47.37
EER97470	Sorghum	cytosol, nucleus, plastid	40.89	47.2
VIT_07s0129g00330.t01	Wine grape	nucleus	42.91	46.49
PGSC0003DMT400064185	Potato	nucleus	39.68	46.23
CDY17741	Canola	nucleus	40.89	46.12
Solyc02g092550.2.1	Tomato	extracellular	40.49	45.87
KRH15442	Soybean	mitochondrion, nucleus	31.17	45.03
CDX81315	Canola	nucleus	42.91	44.92
Bra037847.1-P	Field mustard	nucleus	42.91	44.92
Bra031833.1-P	Field mustard	nucleus	43.72	44.81
KRH58049	Soybean	mitochondrion, nucleus	40.89	44.49
EER92081	Sorghum	cytosol, mitochondrion, nucleus, plastid	41.7	43.83
AT5G67420.2	Thale cress	nucleus	44.13	43.6
KRH04451	Soybean	nucleus	40.49	43.48
CDY23026	Canola	nucleus	42.11	43.33
CDX69315	Canola	nucleus	38.87	43.05
Bra036040.1-P	Field mustard	nucleus	42.51	42.86
Bra012913.1-P	Field mustard	nucleus	41.7	42.74
Bra012164.1-P	Field mustard	nucleus	44.13	42.58
VIT_03s0091g00670.t01	Wine grape	cytosol	33.6	42.56
AT3G49940.1	Thale cress	nucleus	42.51	42.51
CDY02101	Canola	nucleus	41.3	42.32
KRH61393	Soybean	nucleus	31.17	41.62
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	36.03	41.01
Bra011772.1-P	Field mustard	nucleus	39.27	40.93
CDX75662	Canola	nucleus	39.27	40.93
KRH28374	Soybean	nucleus	39.68	40.83
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	35.63	40.55
Bra017831.1-P	Field mustard	nucleus	38.06	40.52
CDY29564	Canola	nucleus	38.06	40.52
AT4G37540.1	Thale cress	nucleus	39.27	40.42
KRH77108	Soybean	nucleus	39.27	39.92
CDX72636	Canola	mitochondrion, nucleus	37.25	39.66
CDX81265	Canola	nucleus	37.65	39.08
VIT_18s0001g09250.t01	Wine grape	nucleus	34.82	38.74
PGSC0003DMT400055393	Potato	nucleus	31.98	38.73
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	31.98	38.73
KRH05603	Soybean	cytosol, extracellular	14.98	34.91
EES02556	Sorghum	mitochondrion	34.41	28.62
OQU92400	Sorghum	mitochondrion, nucleus, plastid	31.58	23.78
KXG22356	Sorghum	plastid	29.96	22.29
KXG22716	Sorghum	plastid	33.2	19.95

Protein Annotations

EnsemblPlants:KXG38039	EnsemblPlantsGene:SORBI_3001G169200	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF2
PFAM:PF03195	PFscan:PS50891	ProteinID:KXG38039	ProteinID:KXG38039.1	SEG:seg	UniParc:UPI00081ABDB7
UniProt:A0A1B6QJG1	MapMan:15.5.24	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:14080706..14083509

Molecular Weight (calculated)

25677.5 Da

IEP (calculated)

6.751

GRAVY (calculated)

0.009

Length

247 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDACVLR PSIEWIHGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA
101: VLRGDSLRAL STVPAAFTER DMDGLYGDVV VGLATGTASS SSPDENNSSS APPSRKRRNV VVNGAGVVVR PTGCHQQQQP AGLLQSCELD LCLTPALSPP
201: PLAGGLLLGG GASDEYSATT TCEDHQPVTG GDHAEARTTP ALLNLFN

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.