Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77108 | Soybean | nucleus | 96.25 | 95.06 |
| KRH05602 | Soybean | nucleus | 19.58 | 77.05 |
| KRH58049 | Soybean | mitochondrion, nucleus | 69.58 | 73.57 |
| KRH04451 | Soybean | nucleus | 70.42 | 73.48 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 66.67 | 70.18 |
| PGSC0003DMT400064185 | Potato | nucleus | 60.83 | 68.87 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 52.08 | 65.79 |
| Solyc02g092550.2.1 | Tomato | extracellular | 59.17 | 65.14 |
| CDX69315 | Canola | nucleus | 57.92 | 62.33 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 52.08 | 60.1 |
| KRH15442 | Soybean | mitochondrion, nucleus | 42.5 | 59.65 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 45.42 | 59.24 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 52.92 | 58.8 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 51.67 | 58.49 |
| Bra011772.1-P | Field mustard | nucleus | 57.5 | 58.23 |
| CDX75662 | Canola | nucleus | 57.5 | 58.23 |
| AT4G37540.1 | Thale cress | nucleus | 57.08 | 57.08 |
| CDX72636 | Canola | mitochondrion, nucleus | 55.0 | 56.9 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 40.0 | 56.14 |
| CDY29564 | Canola | nucleus | 54.17 | 56.03 |
| CDX81265 | Canola | nucleus | 55.42 | 55.88 |
| Bra017831.1-P | Field mustard | nucleus | 53.75 | 55.6 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 39.58 | 55.56 |
| KRH61393 | Soybean | nucleus | 42.08 | 54.59 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 45.83 | 52.63 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 45.0 | 51.43 |
| KRH05603 | Soybean | cytosol, extracellular | 20.42 | 46.23 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 43.75 | 45.26 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 41.67 | 43.48 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 41.25 | 43.04 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 40.83 | 42.98 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 41.67 | 42.92 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 40.83 | 39.68 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 40.0 | 38.25 |
| KRH45269 | Soybean | nucleus | 31.25 | 34.25 |
| KRH46923 | Soybean | mitochondrion | 39.58 | 32.09 |
| KRH48482 | Soybean | mitochondrion | 30.83 | 31.9 |
| KRH01759 | Soybean | mitochondrion | 40.0 | 31.89 |
| KRG90816 | Soybean | nucleus | 29.58 | 31.7 |
| KRH18248 | Soybean | nucleus | 37.5 | 31.25 |
| KRG93864 | Soybean | nucleus | 37.08 | 30.38 |
Protein Annotations
| EMBL:ACUP02006749 | EnsemblPlants:KRH28374 | EnsemblPlantsGene:GLYMA_11G049300 | EntrezGene:100802764 | InterPro:IPR004883 | InterPro:LOB |
| PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:KRH28374 | ProteinID:KRH28374.1 |
| SEG:seg | UniParc:UPI00018DFDC7 | UniProt:I1LH74 | MapMan:15.5.24 | : | : |
Description
hypothetical protein
Coordinates
chr11:+:3704401..3706190
Molecular Weight (calculated)
26272.1 Da
IEP (calculated)
7.199
GRAVY (calculated)
-0.357
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET
101: VLRGGTVRPM PELFGLDAPT PTTDDASEGE VTCTDKWRVR DPNPNFRFPG SRSDKGSSGG KRKRFEELAK LQTATTDLNL RLTPSFLQNA ANFGCRQEIR
201: WPGSPSMNSE ESGTTTACLE SGIGDHYAPD GDRKVLNLFI
101: VLRGGTVRPM PELFGLDAPT PTTDDASEGE VTCTDKWRVR DPNPNFRFPG SRSDKGSSGG KRKRFEELAK LQTATTDLNL RLTPSFLQNA ANFGCRQEIR
201: WPGSPSMNSE ESGTTTACLE SGIGDHYAPD GDRKVLNLFI
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Arabidopsis Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.