CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05602	Soybean	nucleus	24.86	75.41
KRH15442	Soybean	mitochondrion, nucleus	51.35	55.56
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	47.03	50.88
GSMUA_Achr3P18860_001	Banana	cytosol	51.89	50.53
KRH35680	Soybean	cytosol, mitochondrion, nucleus	45.95	49.71
GSMUA_Achr6P07770_001	Banana	mitochondrion	45.95	46.2
GSMUA_Achr3P30130_001	Banana	nucleus	51.89	46.15
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	50.81	46.08
PGSC0003DMT400055393	Potato	nucleus	50.81	46.08
VIT_18s0001g09250.t01	Wine grape	nucleus	54.05	45.05
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.35	44.81
KRH58049	Soybean	mitochondrion, nucleus	54.59	44.49
KRH04451	Soybean	nucleus	55.14	44.35
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	49.19	43.54
GSMUA_Achr4P14150_001	Banana	mitochondrion	50.81	43.52
KRH05603	Soybean	cytosol, extracellular	24.32	42.45
GSMUA_Achr4P32550_001	Banana	mitochondrion	48.11	42.38
KRH28374	Soybean	nucleus	54.59	42.08
KRH77108	Soybean	nucleus	54.59	41.56
HORVU4Hr1G013380.2	Barley	nucleus	41.62	33.77
Os03t0609500-01	Rice	cytosol, nucleus, plastid	42.16	33.62
TraesCS4B01G078800.1	Wheat	nucleus	41.08	33.04
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	41.08	33.04
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	41.08	32.62
KXG38039	Sorghum	mitochondrion, nucleus, plastid	41.62	31.17
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	42.16	31.08
KRH45269	Soybean	nucleus	36.22	30.59
KRH48482	Soybean	mitochondrion	35.14	28.02
KRG90816	Soybean	nucleus	33.51	27.68
KRH18248	Soybean	nucleus	41.62	26.74
KRG93864	Soybean	nucleus	41.62	26.28
KRH46923	Soybean	mitochondrion	40.54	25.34
KRH01759	Soybean	mitochondrion	40.54	24.92

Protein Annotations

EMBL:ACUP02002162	EnsemblPlants:KRH61393	EnsemblPlantsGene:GLYMA_04G044800	EntrezGene:100800624	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH61393	ProteinID:KRH61393.1
SEG:seg	UniParc:UPI0003DEC248	UniProt:A0A0R0K3S6	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr4:-:3582233..3583098

Molecular Weight (calculated)

20304.5 Da

IEP (calculated)

8.791

GRAVY (calculated)

0.003

Length

185 amino acids

Sequence
(BLAST)

001: MVFLYDKDSP RQQKRKSMSC NGCRVLRKRC SERCSLRSSL NWIDCPHAQA HATLFLAKFF GRSDLMFFIS SVPLNNRPAL FQSLLFEACG RTVNPVNGAV
101: GLLLSGNWHV CQAAVHTVLA GGVLRPLSEV VAPSESMFSH QFQSLASDSL KRSSDATAPV MSTMVSGESE ICSSDDGKKL LNLFV

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.