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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plasma membrane 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane, plastid
Any Predictor:mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055393 Potato nucleus 93.14 93.14
KRH05602 Soybean nucleus 19.61 65.57
KRH61393 Soybean nucleus 46.08 50.81
GSMUA_Achr3P18860_001 Banana cytosol 47.06 50.53
KRH15442 Soybean mitochondrion, nucleus 41.67 49.71
GSMUA_Achr6P07770_001 Banana mitochondrion 42.65 47.28
VIT_18s0001g09250.t01 Wine grape nucleus 50.98 46.85
GSMUA_Achr7P26260_001 Banana mitochondrion 46.57 44.81
Solyc02g092550.2.1 Tomato extracellular 47.55 44.5
GSMUA_Achr3P30130_001 Banana nucleus 45.1 44.23
GSMUA_Achr4P14150_001 Banana mitochondrion 46.08 43.52
GSMUA_Achr4P32550_001 Banana mitochondrion 43.63 42.38
Solyc01g107190.2.1 Tomato mitochondrion, nucleus 44.12 41.47
KRH05603 Soybean cytosol, extracellular 21.08 40.57
GSMUA_Achr2P13440_001 Banana mitochondrion, nucleus, plastid 41.18 40.19
HORVU4Hr1G013380.2 Barley nucleus 40.2 35.96
TraesCS4D01G077600.1 Wheat mitochondrion, nucleus, plastid 39.71 35.22
Os03t0609500-01 Rice cytosol, nucleus, plastid 39.71 34.91
TraesCS4B01G078800.1 Wheat nucleus 39.22 34.78
TraesCS4A01G236200.1 Wheat mitochondrion, nucleus, plastid 39.71 34.76
KXG38039 Sorghum mitochondrion, nucleus, plastid 38.73 31.98
Zm00001d033347_P001 Maize mitochondrion, nucleus, plastid 39.22 31.87
Solyc05g009320.2.1 Tomato mitochondrion 37.25 29.92
Solyc03g119530.2.1 Tomato cytosol, nucleus, plastid 35.78 29.55
Solyc02g085910.2.1 Tomato mitochondrion 35.78 26.94
Protein Annotations
EnsemblPlants:Solyc04g077990.2.1EnsemblPlantsGene:Solyc04g077990.2InterPro:IPR004883InterPro:LOBPANTHER:PTHR31304PANTHER:PTHR31304:SF1
PFAM:PF03195PFscan:PS50891UniParc:UPI0002766858UniProt:K4BUN6MapMan:15.5.24:
Description
No Description!
Coordinates
chr4:+:62858942..62859952
Molecular Weight (calculated)
22272.5 Da
IEP (calculated)
5.287
GRAVY (calculated)
-0.126
Length
204 amino acids
Sequence
(BLAST)
001: MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT
101: VLAGGNLRPV LAGILTPPYF DNSFRCGGAW DMPNQFCNKS DSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL GLDSGYGYAE CVKGEEPKLL
201: NLFV
Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Arabidopsis Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.