Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 93.14 | 93.14 |
| KRH05602 | Soybean | nucleus | 20.59 | 68.85 |
| KRH61393 | Soybean | nucleus | 46.08 | 50.81 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 47.06 | 50.53 |
| KRH15442 | Soybean | mitochondrion, nucleus | 41.67 | 49.71 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 43.14 | 47.83 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 50.0 | 45.95 |
| PGSC0003DMT400064185 | Potato | nucleus | 47.55 | 45.75 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 46.57 | 44.81 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 45.1 | 44.23 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 45.59 | 43.06 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 44.12 | 41.47 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 42.65 | 41.43 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 41.18 | 40.19 |
| KRH05603 | Soybean | cytosol, extracellular | 20.59 | 39.62 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 40.2 | 35.96 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 39.71 | 35.22 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 39.71 | 34.91 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 39.22 | 34.78 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 39.71 | 34.76 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 38.73 | 31.98 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 39.22 | 31.87 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 36.27 | 29.25 |
| PGSC0003DMT400014630 | Potato | mitochondrion, nucleus, plastid | 33.82 | 28.28 |
| PGSC0003DMT400032938 | Potato | mitochondrion | 35.29 | 26.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055393 | EnsemblPlantsGene:PGSC0003DMG400021509 | EntrezGene:102601447 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400021509 | RefSeq:XP_006362058.1 | UniParc:UPI00029590EC |
| UniProt:M1BXU3 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021509]
Coordinates
chr4:+:67189914..67190969
Molecular Weight (calculated)
22344.5 Da
IEP (calculated)
4.825
GRAVY (calculated)
-0.208
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KRCSDNCTLR SCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR PDLFKSLLFE ACGRTMNPVT GAVGLLSTGN WHVCQKAVQT
101: VLAGGNLRPV FAGILTPPWF DDSFRFGGAW DMPNQFSNKS ESMFIDGSDQ IEGMEWISSE KRWNTSSSFG SETELSDISL GLDSGYGYAE GVKGEEPKLL
201: NLFV
101: VLAGGNLRPV FAGILTPPWF DDSFRFGGAW DMPNQFSNKS ESMFIDGSDQ IEGMEWISSE KRWNTSSSFG SETELSDISL GLDSGYGYAE GVKGEEPKLL
201: NLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Arabidopsis Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.