CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15442	Soybean	mitochondrion, nucleus	98.36	35.09
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	73.77	26.32
KRH35680	Soybean	cytosol, mitochondrion, nucleus	70.49	25.15
KRH61393	Soybean	nucleus	75.41	24.86
GSMUA_Achr3P18860_001	Banana	cytosol	72.13	23.16
VIT_18s0001g09250.t01	Wine grape	nucleus	81.97	22.52
GSMUA_Achr3P30130_001	Banana	nucleus	75.41	22.12
GSMUA_Achr7P26260_001	Banana	mitochondrion	75.41	21.7
GSMUA_Achr6P07770_001	Banana	mitochondrion	63.93	21.2
PGSC0003DMT400055393	Potato	nucleus	68.85	20.59
GSMUA_Achr4P14150_001	Banana	mitochondrion	72.13	20.37
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	68.85	20.1
KRH04451	Soybean	nucleus	75.41	20.0
KRH58049	Soybean	mitochondrion, nucleus	73.77	19.82
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	65.57	19.61
KRH28374	Soybean	nucleus	77.05	19.58
GSMUA_Achr4P32550_001	Banana	mitochondrion	67.21	19.52
KRH77108	Soybean	nucleus	77.05	19.34
KRG90816	Soybean	nucleus	60.66	16.52
KRH45269	Soybean	nucleus	57.38	15.98
HORVU4Hr1G013380.2	Barley	nucleus	57.38	15.35
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	57.38	15.22
TraesCS4B01G078800.1	Wheat	nucleus	57.38	15.22
KRH48482	Soybean	mitochondrion	57.38	15.09
Os03t0609500-01	Rice	cytosol, nucleus, plastid	57.38	15.09
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	57.38	15.02
KRH18248	Soybean	nucleus	67.21	14.24
KXG38039	Sorghum	mitochondrion, nucleus, plastid	57.38	14.17
KRG93864	Soybean	nucleus	67.21	13.99
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	57.38	13.94
KRH46923	Soybean	mitochondrion	67.21	13.85
KRH01759	Soybean	mitochondrion	67.21	13.62
KRH05603	Soybean	cytosol, extracellular	0.0	0.0

Protein Annotations

EMBL:ACUP02010761	EnsemblPlants:KRH05602	EnsemblPlantsGene:GLYMA_17G2363002	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH05602	ProteinID:KRH05602.1	UniParc:UPI0006EDC3D5
UniProt:A0A0R0FQL8	MapMan:15.5.24	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:39140605..39140997

Molecular Weight (calculated)

6910.4 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.269

Length

61 amino acids

Sequence
(BLAST)

1: MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLMS FISSVPETKR P

Best Arabidopsis Sequence Match ( AT4G37540.1 )
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV

Arabidopsis Description

LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.