CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35680	Soybean	cytosol, mitochondrion, nucleus	88.89	88.89
KRH05602	Soybean	nucleus	26.32	73.77
KRH15442	Soybean	mitochondrion, nucleus	50.88	50.88
GSMUA_Achr3P18860_001	Banana	cytosol	56.14	50.53
GSMUA_Achr6P07770_001	Banana	mitochondrion	52.05	48.37
KRH61393	Soybean	nucleus	50.88	47.03
GSMUA_Achr4P14150_001	Banana	mitochondrion	57.89	45.83
GSMUA_Achr7P26260_001	Banana	mitochondrion	56.73	45.75
GSMUA_Achr3P30130_001	Banana	nucleus	55.56	45.67
VIT_03s0091g00670.t01	Wine grape	cytosol	52.05	45.64
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	55.56	43.78
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	54.97	43.32
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	52.05	42.58
KRH58049	Soybean	mitochondrion, nucleus	56.14	42.29
GSMUA_Achr4P32550_001	Banana	mitochondrion	50.88	41.43
KRH04451	Soybean	nucleus	55.56	41.3
KRH28374	Soybean	nucleus	55.56	39.58
KRH77108	Soybean	nucleus	55.56	39.09
Os03t0609500-01	Rice	cytosol, nucleus, plastid	47.37	34.91
HORVU4Hr1G013380.2	Barley	nucleus	46.2	34.65
TraesCS4B01G078800.1	Wheat	nucleus	46.2	34.35
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	46.2	34.35
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	46.78	34.33
KXG38039	Sorghum	mitochondrion, nucleus, plastid	48.54	33.6
KRH05603	Soybean	cytosol, extracellular	20.47	33.02
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	47.37	32.27
KRH45269	Soybean	nucleus	39.77	31.05
KRH48482	Soybean	mitochondrion	36.26	26.72
KRG90816	Soybean	nucleus	34.5	26.34
KRH18248	Soybean	nucleus	41.52	24.65
KRG93864	Soybean	nucleus	40.94	23.89
KRH46923	Soybean	mitochondrion	40.94	23.65
KRH01759	Soybean	mitochondrion	40.94	23.26

Protein Annotations

EMBL:ACUP02012660	EnsemblPlants:KRG91097	EnsemblPlantsGene:GLYMA_20G133000	EntrezGene:100816269	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRG91097	ProteinID:KRG91097.1
UniParc:UPI000233DEEA	UniProt:I1NG19	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:37304790..37306503

Molecular Weight (calculated)

18745.8 Da

IEP (calculated)

8.067

GRAVY (calculated)

0.046

Length

171 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDDCMLR HCLVWIENPQ AQAHATLFVA KFFGRATLMS FLSSVPSNQR SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK
101: VLRGGAALTP LPQVITSVER VMVGGEIIMC HQPKKQHVGT PPEEESEIST FGSRPLDSAP QSQTNLLTLF F

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.