Factsheet for PGSC0003DMT400066165

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	96.31	96.31
PGSC0003DMT400064185	Potato	nucleus	57.14	58.49
GSMUA_Achr3P18860_001	Banana	cytosol	50.23	57.37
VIT_03s0091g00670.t01	Wine grape	cytosol	50.69	56.41
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	43.78	55.56
KRH35680	Soybean	cytosol, mitochondrion, nucleus	42.4	53.8
GSMUA_Achr3P30130_001	Banana	nucleus	51.15	53.37
GSMUA_Achr4P14150_001	Banana	mitochondrion	52.07	52.31
GSMUA_Achr7P26260_001	Banana	mitochondrion	50.69	51.89
GSMUA_Achr6P07770_001	Banana	mitochondrion	42.86	50.54
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	44.7	46.41
GSMUA_Achr4P32550_001	Banana	mitochondrion	44.7	46.19
PGSC0003DMT400055393	Potato	nucleus	41.47	44.12
Os03t0609500-01	Rice	cytosol, nucleus, plastid	41.94	39.22
TraesCS4B01G078800.1	Wheat	nucleus	41.01	38.7
HORVU4Hr1G013380.2	Barley	nucleus	40.55	38.6
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	40.55	38.26
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	41.01	38.2
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	42.4	36.65
KXG38039	Sorghum	mitochondrion, nucleus, plastid	41.01	36.03
PGSC0003DMT400037711	Potato	mitochondrion	35.94	30.83
PGSC0003DMT400014630	Potato	mitochondrion, nucleus, plastid	34.1	30.33
PGSC0003DMT400032938	Potato	mitochondrion	35.02	27.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400066165	EnsemblPlantsGene:PGSC0003DMG400025752	EntrezGene:102590299	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400025752	RefSeq:XP_006346321.1	UniParc:UPI00018DFDDA
UniProt:M1CF43	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025752]

Coordinates

chr1:+:83704499..83706155

Molecular Weight (calculated)

23716.1 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.267

Length

217 amino acids

Sequence
(BLAST)

001: MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLTSVSESQR PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET
101: VLKGGVLRPL PEFSGVTASP EFDSEANDVD LFRSQSSNFQ SKRKIIDEVS EDLDLGLTSG LSTMVTGGKL NRRTEKRRAA TPSLNSDESD TTTLESGVVY
201: HQNPQQGNET KLLRLFF

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.