Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 96.57 | 97.83 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 95.71 | 96.96 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 93.56 | 95.61 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 78.97 | 79.31 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 76.82 | 72.47 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 71.67 | 66.53 |
| KRH05602 | Soybean | nucleus | 15.02 | 57.38 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 48.5 | 54.07 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 44.21 | 49.05 |
| CDY58550 | Canola | nucleus | 44.21 | 47.47 |
| CDY37852 | Canola | nucleus | 44.21 | 47.47 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 34.33 | 46.78 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 34.33 | 46.78 |
| CDY67844 | Canola | nucleus | 45.49 | 46.7 |
| CDY43575 | Canola | nucleus | 44.21 | 46.61 |
| CDY67455 | Canola | nucleus | 45.49 | 46.49 |
| PGSC0003DMT400064185 | Potato | nucleus | 42.06 | 46.23 |
| Solyc02g092550.2.1 | Tomato | extracellular | 42.92 | 45.87 |
| KRH58049 | Soybean | mitochondrion, nucleus | 44.64 | 45.81 |
| KRH04451 | Soybean | nucleus | 45.06 | 45.65 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 44.64 | 45.61 |
| CDY17741 | Canola | nucleus | 42.49 | 45.21 |
| CDX69315 | Canola | nucleus | 42.92 | 44.84 |
| KRH15442 | Soybean | mitochondrion, nucleus | 32.62 | 44.44 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 36.48 | 43.59 |
| CDX81315 | Canola | nucleus | 43.78 | 43.22 |
| Bra037847.1-P | Field mustard | nucleus | 43.78 | 43.22 |
| AT5G67420.2 | Thale cress | nucleus | 46.35 | 43.2 |
| Bra031833.1-P | Field mustard | nucleus | 44.64 | 43.15 |
| AT4G37540.1 | Thale cress | nucleus | 43.78 | 42.5 |
| CDY23026 | Canola | nucleus | 43.78 | 42.5 |
| Bra036040.1-P | Field mustard | nucleus | 44.64 | 42.45 |
| Bra012913.1-P | Field mustard | nucleus | 43.78 | 42.32 |
| Bra011772.1-P | Field mustard | nucleus | 42.92 | 42.19 |
| CDX75662 | Canola | nucleus | 42.92 | 42.19 |
| AT3G49940.1 | Thale cress | nucleus | 44.64 | 42.11 |
| CDY02101 | Canola | nucleus | 43.35 | 41.91 |
| Bra012164.1-P | Field mustard | nucleus | 45.92 | 41.8 |
| KRH28374 | Soybean | nucleus | 42.92 | 41.67 |
| CDY29564 | Canola | nucleus | 41.2 | 41.38 |
| Bra017831.1-P | Field mustard | nucleus | 41.2 | 41.38 |
| KRH61393 | Soybean | nucleus | 32.62 | 41.08 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 38.2 | 41.01 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 38.2 | 41.01 |
| CDX72636 | Canola | mitochondrion, nucleus | 40.77 | 40.95 |
| KRH77108 | Soybean | nucleus | 42.49 | 40.74 |
| CDX81265 | Canola | nucleus | 41.2 | 40.34 |
| TraesCS2A01G194500.1 | Wheat | cytosol, nucleus, plastid | 39.91 | 39.74 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 34.76 | 39.71 |
| PGSC0003DMT400055393 | Potato | nucleus | 34.76 | 39.71 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 36.48 | 38.29 |
| KRH05603 | Soybean | cytosol, extracellular | 15.88 | 34.91 |
| TraesCS5A01G529400.1 | Wheat | nucleus | 33.48 | 29.1 |
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 33.48 | 26.99 |
| TraesCS2A01G271300.1 | Wheat | nucleus | 33.91 | 25.73 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G236200.1 | EnsemblPlantsGene:TraesCS4A01G236200 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF2 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4A:+:544953084..544954778
Molecular Weight (calculated)
24012.4 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.059
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAAEA
101: VLRGDSLRSL SAVPAAFTER DMAGLYGNVG TNTGSSSSLH SSPDNSTSAP ARKRSKNSPG CGAVGGQQQV KLPGPGPVLQ SCELDLCLTP LSSPLAGGRR
201: GGASDEYSTT TCCEEASGDA AEAGAPPLLN LFN
101: VLRGDSLRSL SAVPAAFTER DMAGLYGNVG TNTGSSSSLH SSPDNSTSAP ARKRSKNSPG CGAVGGQQQV KLPGPGPVLQ SCELDLCLTP LSSPLAGGRR
201: GGASDEYSTT TCCEEASGDA AEAGAPPLLN LFN
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.