Factsheet for Bra012913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02101	Canola	nucleus	98.76	98.76
CDY23026	Canola	nucleus	96.27	96.67
Bra036040.1-P	Field mustard	nucleus	87.97	86.53
AT3G49940.1	Thale cress	nucleus	82.57	80.57
Bra037847.1-P	Field mustard	nucleus	70.95	72.46
Bra012164.1-P	Field mustard	nucleus	76.35	71.88
Bra031833.1-P	Field mustard	nucleus	71.78	71.78
PGSC0003DMT400064185	Potato	nucleus	56.02	63.68
Solyc02g092550.2.1	Tomato	extracellular	56.85	62.84
GSMUA_Achr3P30130_001	Banana	nucleus	53.94	62.5
GSMUA_Achr3P18860_001	Banana	cytosol	48.55	61.58
GSMUA_Achr4P14150_001	Banana	mitochondrion	55.19	61.57
GSMUA_Achr6P07770_001	Banana	mitochondrion	45.23	59.24
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.87	58.96
Bra011772.1-P	Field mustard	nucleus	56.85	57.81
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	49.79	57.42
Bra017831.1-P	Field mustard	nucleus	53.94	56.03
GSMUA_Achr4P32550_001	Banana	mitochondrion	46.89	53.81
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	42.32	43.78
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	41.49	43.48
Os03t0609500-01	Rice	cytosol, nucleus, plastid	41.49	43.1
TraesCS4B01G078800.1	Wheat	nucleus	41.08	43.04
HORVU4Hr1G013380.2	Barley	nucleus	40.66	42.98
KXG38039	Sorghum	mitochondrion, nucleus, plastid	42.74	41.7
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	40.66	39.04
Bra004315.1-P	Field mustard	mitochondrion	31.95	32.49
Bra021433.1-P	Field mustard	nucleus	34.44	31.44

Protein Annotations

EnsemblPlants:Bra012913.1	EnsemblPlants:Bra012913.1-P	EnsemblPlantsGene:Bra012913	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025405F3	UniProt:M4D8V3
MapMan:15.5.24	:	:	:	:	:

Description

AT3G49940 (E=4e-096) LBD38 | LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)

Coordinates

chrA03:+:21540949..21541767

Molecular Weight (calculated)

26608.5 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.328

Length

241 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSVCQAAVET
101: VLRGGSLRPI PELLTRDGGF PSPTSDEASE ICMEMMNDSG DRNVYYHHSR FSSSRSRATA SPPKRRRLAS EQQQERPSSE LDFSLIPTFP VKTTPFKEET
201: RRPETPYSEE SVTTAPFLDH IASERFVRGG GETTKLLNLF A

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.