Factsheet for Bra004315.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96013	Canola	mitochondrion	100.0	100.0
AT1G68510.1	Thale cress	mitochondrion, nucleus	88.19	89.7
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	30.38	79.12
Os01t0511000-01	Rice	cytosol, nucleus, plastid	39.24	50.0
GSMUA_Achr9P00580_001	Banana	mitochondrion	45.15	45.73
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	45.57	44.81
KRH45269	Soybean	nucleus	40.51	43.84
PGSC0003DMT400037711	Potato	mitochondrion	45.99	43.08
Solyc05g009320.2.1	Tomato	mitochondrion	45.57	42.52
GSMUA_Achr2P14600_001	Banana	mitochondrion	43.04	42.5
Bra021433.1-P	Field mustard	nucleus	47.26	42.42
GSMUA_Achr1P20970_001	Banana	mitochondrion	44.3	41.83
KRG90816	Soybean	nucleus	39.24	41.52
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	48.1	38.64
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	45.57	38.3
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	46.41	37.04
TraesCS4D01G354200.1	Wheat	nucleus	42.62	36.73
EES02556	Sorghum	mitochondrion	45.57	36.36
Zm00001d040004_P001	Maize	mitochondrion	45.15	35.91
TraesCS5A01G529400.1	Wheat	nucleus	40.51	35.82
Zm00001d010749_P001	Maize	plastid	42.62	35.69
TraesCS4B01G361200.1	Wheat	nucleus	40.93	35.02
TraesCS4B01G361100.1	Wheat	cytosol, nucleus, plastid	43.04	34.81
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	45.57	34.5
HORVU4Hr1G086700.1	Barley	cytosol, nucleus	43.46	34.33
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	41.77	34.26
TraesCS4D01G354100.1	Wheat	cytosol, nucleus, plastid	42.62	33.89
OQU92400	Sorghum	mitochondrion, nucleus, plastid	46.84	33.84
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	43.88	33.23
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	44.73	33.12
Bra011772.1-P	Field mustard	nucleus	32.07	32.07
Bra012913.1-P	Field mustard	nucleus	32.49	31.95
Bra017831.1-P	Field mustard	nucleus	31.22	31.9
Bra036040.1-P	Field mustard	nucleus	32.91	31.84
KXG22356	Sorghum	plastid	43.46	31.02
Bra037847.1-P	Field mustard	nucleus	30.38	30.51
Bra031833.1-P	Field mustard	nucleus	30.8	30.29
Bra012164.1-P	Field mustard	nucleus	31.22	28.91
KXG22716	Sorghum	plastid	45.15	26.03

Protein Annotations

EnsemblPlants:Bra004315.1	EnsemblPlants:Bra004315.1-P	EnsemblPlantsGene:Bra004315	InterPro:IPR004883	InterPro:LOB	InterPro:LOBD
PANTHER:PTHR31304	PANTHER:PTHR31304:SF7	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155	UniParc:UPI000254174E
UniProt:M4CJD1	MapMan:15.5.24	:	:	:	:

Description

AT1G68510 (E=1e-117) LBD42 | LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)

Coordinates

chrA07:+:17939314..17940220

Molecular Weight (calculated)

25764.6 Da

IEP (calculated)

7.912

GRAVY (calculated)

-0.366

Length

237 amino acids

Sequence
(BLAST)

001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV
101: DAILNGLPIT HTPLPSASSS HQIIPPHRTY DIRHVAKDPT TGGDSSESLA LAPRVNGNKA KTQTGRLKRL AETVDYQLGE CSHDTWQLQC SGATHGYGQL
201: ALKNVANRRE DPLNQSSNLG CDDQVDTNEV GLELRLG

Best Arabidopsis Sequence Match ( AT1G68510.1 )
(BLAST)

001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG

Arabidopsis Description

LBD42LBD42 [Source:UniProtKB/TrEMBL;Acc:A0A178W6D5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.