Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004315.1-P | Field mustard | mitochondrion | 89.7 | 88.19 |
| CDX96013 | Canola | mitochondrion | 89.7 | 88.19 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 89.7 | 87.08 |
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 30.9 | 79.12 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 39.91 | 50.0 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 48.07 | 47.86 |
| AT1G67100.1 | Thale cress | mitochondrion | 46.78 | 46.78 |
| KRH45269 | Soybean | nucleus | 42.49 | 45.21 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 48.93 | 45.06 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 46.35 | 44.81 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 48.5 | 44.49 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 46.78 | 43.43 |
| KRG90816 | Soybean | nucleus | 41.2 | 42.86 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 43.35 | 42.08 |
| AT3G02550.1 | Thale cress | nucleus | 45.49 | 40.3 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 47.64 | 39.36 |
| TraesCS3B01G106900.1 | Wheat | cytosol, mitochondrion, nucleus | 49.79 | 39.32 |
| TraesCS4D01G354200.1 | Wheat | nucleus | 45.06 | 38.18 |
| TraesCS5A01G529400.1 | Wheat | nucleus | 43.78 | 38.06 |
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 48.07 | 37.71 |
| EES02556 | Sorghum | mitochondrion | 47.64 | 37.37 |
| Zm00001d010749_P001 | Maize | plastid | 45.06 | 37.1 |
| Zm00001d040004_P001 | Maize | mitochondrion | 47.21 | 36.91 |
| TraesCS4B01G361200.1 | Wheat | nucleus | 43.78 | 36.82 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 45.49 | 36.18 |
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 44.21 | 35.64 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 47.64 | 35.46 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 45.49 | 35.33 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 48.5 | 35.31 |
| TraesCS4D01G354100.1 | Wheat | cytosol, nucleus, plastid | 45.06 | 35.23 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 47.21 | 35.14 |
| OQU92400 | Sorghum | mitochondrion, nucleus, plastid | 48.5 | 34.45 |
| AT4G37540.1 | Thale cress | nucleus | 33.48 | 32.5 |
| KXG22356 | Sorghum | plastid | 45.92 | 32.23 |
| AT3G49940.1 | Thale cress | nucleus | 32.62 | 30.77 |
| AT5G67420.2 | Thale cress | nucleus | 32.62 | 30.4 |
| KXG22716 | Sorghum | plastid | 46.78 | 26.52 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:843180 | UniProt:A0A178W6D5 | ProteinID:AAG52389.1 | EMBL:AB473869 | ProteinID:AEE34801.1 |
| EMBL:AF447896 | ArrayExpress:AT1G68510 | EnsemblPlantsGene:AT1G68510 | RefSeq:AT1G68510 | TAIR:AT1G68510 | RefSeq:AT1G68510-TAIR-G |
| EnsemblPlants:AT1G68510.1 | TAIR:AT1G68510.1 | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD42 | InterPro:LOB |
| InterPro:LOBD | RefSeq:NP_177018.1 | ProteinID:OAP13868.1 | PFAM:PF03195 | PIRSF:PIRSF038155 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0004507 | PO:PO:0009009 | PO:PO:0009010 | PFscan:PS50891 | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF7 | UniProt:Q9CA30 | UniParc:UPI00000A11C3 | : | : | : |
Description
LBD42LBD42 [Source:UniProtKB/TrEMBL;Acc:A0A178W6D5]
Coordinates
chr1:+:25706882..25708503
Molecular Weight (calculated)
25544.1 Da
IEP (calculated)
7.770
GRAVY (calculated)
-0.404
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.