Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42342 | Canola | mitochondrion | 86.7 | 81.78 |
| CDY12617 | Canola | mitochondrion | 86.27 | 81.38 |
| GSMUA_Achr4P13790_001 | Banana | mitochondrion | 57.08 | 57.33 |
| AT3G02550.1 | Thale cress | nucleus | 63.95 | 56.65 |
| GSMUA_Achr4P06820_001 | Banana | cytosol, mitochondrion, plastid | 56.22 | 55.98 |
| KRH18248 | Soybean | nucleus | 69.1 | 55.9 |
| GSMUA_Achr9P21360_001 | Banana | mitochondrion | 53.22 | 55.36 |
| KRG93864 | Soybean | nucleus | 69.53 | 55.29 |
| VIT_14s0006g02950.t01 | Wine grape | mitochondrion | 62.23 | 51.24 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 46.78 | 46.78 |
| GSMUA_Achr4P03700_001 | Banana | cytosol, mitochondrion, nucleus | 53.65 | 38.34 |
| AT3G49940.1 | Thale cress | nucleus | 39.06 | 36.84 |
| AT4G37540.1 | Thale cress | nucleus | 37.77 | 36.67 |
| AT5G67420.2 | Thale cress | nucleus | 38.2 | 35.6 |
| Os01t0129600-00 | Rice | cytosol | 36.05 | 24.78 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:843030 | UniProt:A0A178WDZ5 | ProteinID:AAD10658.1 | EMBL:AB473870 | ProteinID:AEE34596.1 |
| EMBL:AK229650 | ArrayExpress:AT1G67100 | EnsemblPlantsGene:AT1G67100 | RefSeq:AT1G67100 | TAIR:AT1G67100 | RefSeq:AT1G67100-TAIR-G |
| EnsemblPlants:AT1G67100.1 | TAIR:AT1G67100.1 | EMBL:BT010943 | EMBL:BT011650 | GO:GO:0008150 | GO:GO:0009719 |
| GO:GO:0009739 | InterPro:IPR004883 | Symbol:LBD40 | InterPro:LOB | InterPro:LOBD | RefSeq:NP_176881.1 |
| ProteinID:OAP16344.1 | PFAM:PF03195 | PIRSF:PIRSF038155 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009052 | PFscan:PS50891 | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 |
| UniProt:Q9ZW96 | UniParc:UPI00000A7A4C | SEG:seg | : | : | : |
Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
Coordinates
chr1:+:25053673..25054864
Molecular Weight (calculated)
25701.9 Da
IEP (calculated)
8.122
GRAVY (calculated)
-0.327
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.