Factsheet for GSMUA_Achr4P13790_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	32.76	83.52
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	72.41	71.79
GSMUA_Achr9P21360_001	Banana	mitochondrion	68.53	70.98
GSMUA_Achr3P29520_001	Banana	mitochondrion	71.12	70.82
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	67.24	68.42
GSMUA_Achr9P00580_001	Banana	mitochondrion	62.93	62.39
CDY54302	Canola	cytosol, mitochondrion, nucleus	38.36	60.14
CDY34735	Canola	nucleus	48.71	60.11
AT1G67100.1	Thale cress	mitochondrion	57.33	57.08
CDY12617	Canola	mitochondrion	59.05	55.47
CDY42342	Canola	mitochondrion	58.62	55.06
GSMUA_Achr1P20970_001	Banana	mitochondrion	56.9	52.59
KRH18248	Soybean	nucleus	65.09	52.43
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	72.84	51.84
CDX74249	Canola	nucleus	57.76	51.54
VIT_01s0011g03540.t01	Wine grape	nucleus	56.03	51.38
KRH01759	Soybean	mitochondrion	65.95	50.83
CDX91999	Canola	nucleus	56.9	50.77
Bra021433.1-P	Field mustard	nucleus	57.76	50.76
AT3G02550.1	Thale cress	nucleus	57.33	50.57
KRG93864	Soybean	nucleus	63.79	50.51
KRH46923	Soybean	mitochondrion	64.22	50.34
VIT_14s0006g02950.t01	Wine grape	mitochondrion	61.21	50.18
PGSC0003DMT400032938	Potato	mitochondrion	56.47	47.99
Solyc02g085910.2.1	Tomato	mitochondrion	56.03	47.97
GSMUA_Achr2P14600_001	Banana	mitochondrion	49.14	47.5
GSMUA_Achr3P18860_001	Banana	cytosol	37.5	45.79
GSMUA_Achr6P07770_001	Banana	mitochondrion	33.62	42.39
GSMUA_Achr3P30130_001	Banana	nucleus	36.64	40.87
GSMUA_Achr4P14150_001	Banana	mitochondrion	37.07	39.81
GSMUA_Achr7P26260_001	Banana	mitochondrion	35.34	38.68
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	31.9	35.41
GSMUA_Achr4P32550_001	Banana	mitochondrion	31.9	35.24

Protein Annotations

EnsemblPlants:GSMUA_Achr4P13790_001	EnsemblPlants:GSMUA_Achr4T13790_001	EnsemblPlantsGene:GSMUA_Achr4G13790_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296C725	UniProt:M0SNP4
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13790_001]

Coordinates

chr4:+:10330335..10331577

Molecular Weight (calculated)

24770.4 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.207

Length

232 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV
101: EAVLKGAPIV QIPYEKAAST PAPPLKAYDI RHVSKDSAAA AARAAEELHK NESMASADTA EEASHVSQGE PQRAEEAEQE EGEISLELTL GLEPASRSAR
201: PAEHEAAPRC DVSSWDAVAC TSGLGLALPP PS

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.