Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 32.46 | 81.32 |
| GSMUA_Achr3P29520_001 | Banana | mitochondrion | 74.56 | 72.96 |
| GSMUA_Achr4P06820_001 | Banana | cytosol, mitochondrion, plastid | 71.49 | 69.66 |
| GSMUA_Achr4P13790_001 | Banana | mitochondrion | 68.42 | 67.24 |
| GSMUA_Achr9P21360_001 | Banana | mitochondrion | 64.04 | 65.18 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 64.47 | 62.82 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 57.89 | 52.59 |
| GSMUA_Achr4P03700_001 | Banana | cytosol, mitochondrion, nucleus | 67.54 | 47.24 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 49.12 | 46.67 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 34.65 | 41.58 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 35.53 | 38.94 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 36.84 | 38.89 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 31.14 | 38.59 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 35.53 | 38.21 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 32.46 | 35.24 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 31.58 | 34.45 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP00460_001 | EnsemblPlants:GSMUA_AchrUn_randomT00460_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG00460_001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF9 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00029622B2 | UniProt:M0U558 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
LOB domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00460_001]
Coordinates
chrchrUn_random:-:1682129..1683047
Molecular Weight (calculated)
24443.2 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.158
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCSDDCS IRPCLEWIRN PESQANATVF LAKFYGRAGL MNLINAGPEH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAM
101: ESVLKGSPIV QIPSEAAAAT PVPPLKAYDI RHVAKDAELH KPNAGGSGGD GDGRENESVF SADAASHVSQ GELSPAEEGE VGLELTLGLE PWLRPDRAIR
201: PAGDSRCDVS RLNADTCKVD LCLQLPVA
101: ESVLKGSPIV QIPSEAAAAT PVPPLKAYDI RHVAKDAELH KPNAGGSGGD GDGRENESVF SADAASHVSQ GELSPAEEGE VGLELTLGLE PWLRPDRAIR
201: PAGDSRCDVS RLNADTCKVD LCLQLPVA
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.