Factsheet for GSMUA_Achr4P06820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	32.91	84.62
GSMUA_Achr3P29520_001	Banana	mitochondrion	76.07	76.39
GSMUA_Achr9P21360_001	Banana	mitochondrion	71.79	75.0
GSMUA_Achr4P13790_001	Banana	mitochondrion	71.79	72.41
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	69.66	71.49
GSMUA_Achr9P00580_001	Banana	mitochondrion	65.38	65.38
CDY34735	Canola	nucleus	49.15	61.17
CDY54302	Canola	cytosol, mitochondrion, nucleus	36.32	57.43
AT1G67100.1	Thale cress	mitochondrion	55.98	56.22
GSMUA_Achr1P20970_001	Banana	mitochondrion	58.55	54.58
CDY12617	Canola	mitochondrion	56.84	53.85
KRH18248	Soybean	nucleus	65.81	53.47
CDY42342	Canola	mitochondrion	56.41	53.44
VIT_01s0011g03540.t01	Wine grape	nucleus	57.69	53.36
KRH46923	Soybean	mitochondrion	67.09	53.04
Bra021433.1-P	Field mustard	nucleus	59.4	52.65
KRH01759	Soybean	mitochondrion	67.52	52.49
KRG93864	Soybean	nucleus	65.38	52.22
VIT_14s0006g02950.t01	Wine grape	mitochondrion	61.54	50.88
CDX74249	Canola	nucleus	56.41	50.77
AT3G02550.1	Thale cress	nucleus	56.41	50.19
CDX91999	Canola	nucleus	55.56	50.0
GSMUA_Achr2P14600_001	Banana	mitochondrion	50.85	49.58
PGSC0003DMT400032938	Potato	mitochondrion	57.27	49.08
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	67.95	48.77
Solyc02g085910.2.1	Tomato	mitochondrion	55.98	48.34
GSMUA_Achr3P18860_001	Banana	cytosol	35.9	44.21
GSMUA_Achr6P07770_001	Banana	mitochondrion	32.48	41.3
GSMUA_Achr3P30130_001	Banana	nucleus	36.32	40.87
GSMUA_Achr4P14150_001	Banana	mitochondrion	36.75	39.81
GSMUA_Achr7P26260_001	Banana	mitochondrion	34.62	38.21
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	32.91	36.84
GSMUA_Achr4P32550_001	Banana	mitochondrion	32.48	36.19
Os01t0129600-00	Rice	cytosol	41.45	28.61

Protein Annotations

EnsemblPlants:GSMUA_Achr4P06820_001	EnsemblPlants:GSMUA_Achr4T06820_001	EnsemblPlantsGene:GSMUA_Achr4G06820_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	UniParc:UPI000295A65F	UniProt:M0SLP9	MapMan:15.5.24

Description

LOB domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06820_001]

Coordinates

chr4:+:5118671..5119614

Molecular Weight (calculated)

24840.6 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.159

Length

234 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS CESQANATVF LAKFYGRAGL LNLINAGPEH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV
101: EAVLKGAPIA QIPIEMAAST PAPPLKACDI RHVSKGSGAA RAAAELHKDG ECRENESMSS ADTVEEEASH VSQGEPDSAE EDEVGLELTL GFEPVSRPTP
201: ARRPRSGVDG RCDLSATDMG ECTADLGLAL PAAP

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.