Factsheet for Os01t0129600-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	28.61	41.45
AT1G67100.1	Thale cress	mitochondrion	24.78	36.05
CDY34735	Canola	nucleus	19.76	35.64
Bra021433.1-P	Field mustard	nucleus	27.14	34.85
CDY12617	Canola	mitochondrion	24.78	34.01
CDY42342	Canola	mitochondrion	24.78	34.01
VIT_01s0011g03540.t01	Wine grape	nucleus	25.37	33.99
KRH18248	Soybean	nucleus	28.32	33.33
KRH46923	Soybean	mitochondrion	28.91	33.11
CDX74249	Canola	nucleus	25.37	33.08
CDX91999	Canola	nucleus	25.37	33.08
VIT_14s0006g02950.t01	Wine grape	mitochondrion	27.43	32.86
KRH01759	Soybean	mitochondrion	28.91	32.56
Solyc02g085910.2.1	Tomato	mitochondrion	25.96	32.47
KRG93864	Soybean	nucleus	28.02	32.42
PGSC0003DMT400032938	Potato	mitochondrion	25.96	32.23
AT3G02550.1	Thale cress	nucleus	24.78	31.94
Os01t0511000-01	Rice	cytosol, nucleus, plastid	15.93	29.03
CDY54302	Canola	cytosol, mitochondrion, nucleus	12.09	27.7
Os03t0445700-01	Rice	cytosol, mitochondrion, plastid	16.52	27.45
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	25.37	26.38
Os03t0609500-01	Rice	cytosol, nucleus, plastid	16.52	24.14
Os07t0589000-01	Rice	cytosol, mitochondrion, nucleus, plastid	14.45	21.68

Protein Annotations

EnsemblPlants:Os01t0129600-00	EnsemblPlantsGene:Os01g0129600	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF10
PFAM:PF03195	ProteinID:BAS70203.1	SEG:seg	UniParc:UPI000393A355	UniProt:A0A0P0UXR8	MapMan:35.1

Description

Similar to LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40). (Os01t0129600-00)

Coordinates

chr1:+:1657306..1658388

Molecular Weight (calculated)

36060.7 Da

IEP (calculated)

8.642

GRAVY (calculated)

-0.451

Length

339 amino acids

Sequence
(BLAST)

001: LGIASSISPV VVSGEPRGLV CEDHADELQR VPRAAQGVQR QLRHPPLPAV DSQPRCAGQR HRLPRQVLRP RRPHQPHHRR PRALRSLTLG LRTCAAIFRS
101: LLYEACGRML NPVYGSVGLL WSGNWQLCQS AVESVLRGMP IAQPPPSATA VPPLPTCDIR HVGARRGDVH GAAAGPVADL HRLDISSRAK FKRPGGGAAA
201: AHRSDHAAFE LVFSKPAAAM AVDVIRQAQP LNWAPGALSH ESASHDAAPP ESEGHSNDTA DTVDGSHVSQ SEPEPRATSA ATEVHDAGLD LTLGLPPPPP
301: PVQKTEPADS DGGSQQQHDH RKEKPVELGL AISTKVAAQ

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.