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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34735 Canola nucleus 66.22 52.13
CDX91999 Canola nucleus 69.59 39.62
CDX74249 Canola nucleus 68.92 39.23
Bra021433.1-P Field mustard nucleus 69.59 39.02
GSMUA_Achr4P13790_001 Banana mitochondrion 60.14 38.36
AT3G02550.1 Thale cress nucleus 67.57 38.02
GSMUA_Achr9P21360_001 Banana mitochondrion 56.76 37.5
CDY12617 Canola mitochondrion 60.81 36.44
GSMUA_Achr4P06820_001 Banana cytosol, mitochondrion, plastid 57.43 36.32
CDY42342 Canola mitochondrion 60.14 36.03
VIT_01s0011g03540.t01 Wine grape nucleus 60.14 35.18
CDX96013 Canola mitochondrion 53.38 33.33
Solyc02g085910.2.1 Tomato mitochondrion 60.14 32.84
PGSC0003DMT400032938 Potato mitochondrion 60.14 32.6
CDY38588 Canola cytosol, mitochondrion, nucleus 52.7 32.5
CDX69315 Canola nucleus 44.59 29.6
CDY37852 Canola nucleus 41.89 28.57
CDY58550 Canola nucleus 41.89 28.57
CDY17741 Canola nucleus 41.89 28.31
CDX75662 Canola nucleus 45.27 28.27
CDY43575 Canola nucleus 41.22 27.6
CDY29564 Canola nucleus 43.24 27.59
CDX72636 Canola mitochondrion, nucleus 43.24 27.59
CDY67844 Canola nucleus 41.89 27.31
CDX81265 Canola nucleus 43.92 27.31
CDY67455 Canola nucleus 41.89 27.19
CDX81315 Canola nucleus 42.57 26.69
GSMUA_Achr4P03700_001 Banana cytosol, mitochondrion, nucleus 58.78 26.69
CDY02101 Canola nucleus 41.89 25.73
CDY23026 Canola nucleus 41.22 25.42
Os01t0129600-00 Rice cytosol 27.7 12.09
Protein Annotations
EnsemblPlants:CDY54302EnsemblPlantsGene:GSBRNA2T00013788001InterPro:IPR004883InterPro:LOBPANTHER:PTHR31304PANTHER:PTHR31304:SF9
PFAM:PF03195PFscan:PS50891ProteinID:CDY54302ProteinID:CDY54302.1SEG:segUniParc:UPI0004EF2A2E
UniProt:A0A078IWC8MapMan:15.5.24::::
Description
BnaC01g42010DBnaC01g42010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWC8]
Coordinates
chrLK033300:+:57100..57630
Molecular Weight (calculated)
16906.0 Da
IEP (calculated)
9.823
GRAVY (calculated)
0.067
Length
148 amino acids
Sequence
(BLAST)
001: MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH LRPGIFRSLL HEACGRIVNP IYGSVCYELI CVNFFVKLHY
101: QTNLRWSCPL YYPKYSYKRS LLRRLSRLLI VKSSNIPDDL TVSLLRII
Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Arabidopsis Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.