Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037847.1-P | Field mustard | nucleus | 95.34 | 95.34 |
| CDY37852 | Canola | nucleus | 75.42 | 82.03 |
| CDY58550 | Canola | nucleus | 74.58 | 81.11 |
| AT5G67420.2 | Thale cress | nucleus | 85.17 | 80.4 |
| CDY67844 | Canola | nucleus | 77.12 | 80.18 |
| CDY67455 | Canola | nucleus | 76.69 | 79.39 |
| CDY43575 | Canola | nucleus | 73.73 | 78.73 |
| CDY17741 | Canola | nucleus | 65.25 | 70.32 |
| CDY02101 | Canola | nucleus | 70.76 | 69.29 |
| CDY23026 | Canola | nucleus | 70.34 | 69.17 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 51.27 | 63.68 |
| PGSC0003DMT400064185 | Potato | nucleus | 55.51 | 61.79 |
| Solyc02g092550.2.1 | Tomato | extracellular | 55.93 | 60.55 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 52.54 | 59.62 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 53.39 | 58.33 |
| CDX75662 | Canola | nucleus | 58.47 | 58.23 |
| CDX69315 | Canola | nucleus | 54.66 | 57.85 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 51.27 | 57.08 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 43.22 | 55.43 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 48.31 | 54.55 |
| CDX72636 | Canola | mitochondrion, nucleus | 53.39 | 54.31 |
| CDX81265 | Canola | nucleus | 54.24 | 53.78 |
| CDY29564 | Canola | nucleus | 52.12 | 53.02 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 45.34 | 50.95 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 43.64 | 44.4 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 42.8 | 43.91 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 42.8 | 43.91 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 43.22 | 43.78 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 41.95 | 43.42 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 44.92 | 42.91 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 26.69 | 42.57 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 42.37 | 39.84 |
| CDY34735 | Canola | nucleus | 30.51 | 38.3 |
| CDY42342 | Canola | mitochondrion | 37.29 | 35.63 |
| CDY12617 | Canola | mitochondrion | 37.29 | 35.63 |
| CDX91999 | Canola | nucleus | 34.75 | 31.54 |
| CDX74249 | Canola | nucleus | 34.75 | 31.54 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 31.36 | 30.83 |
| CDX96013 | Canola | mitochondrion | 30.93 | 30.8 |
Protein Annotations
| EnsemblPlants:CDX81315 | EnsemblPlantsGene:GSBRNA2T00134844001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX81315 | ProteinID:CDX81315.1 | SEG:seg | UniParc:UPI0004EF0C27 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC09g07260D
Coordinates
chrLK031824:+:889524..890767
Molecular Weight (calculated)
25634.4 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.342
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WRICQAAVET
101: VLRGGSLRPI PELITHGGGF PSATSEEASE ICAEMLKLQQ NDGSSDRNIY NHSRFSSSRS RSTLDSSPRK RKLDISLNPS LPMKAVPSST RHQSRTPSMN
201: SEESMTTTTT FWDNSASGAQ HGNGGGETSR LLNLFV
101: VLRGGSLRPI PELITHGGGF PSATSEEASE ICAEMLKLQQ NDGSSDRNIY NHSRFSSSRS RSTLDSSPRK RKLDISLNPS LPMKAVPSST RHQSRTPSMN
201: SEESMTTTTT FWDNSASGAQ HGNGGGETSR LLNLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.