Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 81.73 | 78.7 |
| KRH05602 | Soybean | nucleus | 22.12 | 75.41 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 76.44 | 75.0 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 64.42 | 70.53 |
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 30.29 | 69.23 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 56.25 | 63.59 |
| PGSC0003DMT400064185 | Potato | nucleus | 60.58 | 59.43 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 58.17 | 57.89 |
| CDY17741 | Canola | nucleus | 60.58 | 57.53 |
| Solyc02g092550.2.1 | Tomato | extracellular | 60.1 | 57.34 |
| CDY37852 | Canola | nucleus | 59.62 | 57.14 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 62.02 | 56.58 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 46.15 | 56.14 |
| CDY58550 | Canola | nucleus | 58.17 | 55.76 |
| KRH15442 | Soybean | mitochondrion, nucleus | 45.67 | 55.56 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 45.67 | 55.56 |
| CDY67844 | Canola | nucleus | 60.1 | 55.07 |
| CDY67455 | Canola | nucleus | 60.1 | 54.82 |
| CDY43575 | Canola | nucleus | 58.17 | 54.75 |
| Bra012913.1-P | Field mustard | nucleus | 62.5 | 53.94 |
| KRH04451 | Soybean | nucleus | 59.62 | 53.91 |
| CDY02101 | Canola | nucleus | 62.02 | 53.53 |
| CDY23026 | Canola | nucleus | 61.54 | 53.33 |
| KRH58049 | Soybean | mitochondrion, nucleus | 58.17 | 53.3 |
| CDX81315 | Canola | nucleus | 59.62 | 52.54 |
| Bra037847.1-P | Field mustard | nucleus | 59.62 | 52.54 |
| KRH77108 | Soybean | nucleus | 61.06 | 52.26 |
| Bra036040.1-P | Field mustard | nucleus | 61.54 | 52.24 |
| KRH28374 | Soybean | nucleus | 60.1 | 52.08 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 54.33 | 52.07 |
| CDX69315 | Canola | nucleus | 55.77 | 52.02 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 52.4 | 51.9 |
| KRH61393 | Soybean | nucleus | 46.15 | 51.89 |
| Bra031833.1-P | Field mustard | nucleus | 60.1 | 51.87 |
| AT3G49940.1 | Thale cress | nucleus | 61.54 | 51.82 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 48.56 | 51.79 |
| AT4G37540.1 | Thale cress | nucleus | 59.13 | 51.25 |
| AT5G67420.2 | Thale cress | nucleus | 61.54 | 51.2 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 53.37 | 51.15 |
| CDX75662 | Canola | nucleus | 57.69 | 50.63 |
| Bra011772.1-P | Field mustard | nucleus | 57.69 | 50.63 |
| Bra012164.1-P | Field mustard | nucleus | 61.54 | 50.0 |
| CDY29564 | Canola | nucleus | 55.29 | 49.57 |
| CDX72636 | Canola | mitochondrion, nucleus | 55.29 | 49.57 |
| Bra017831.1-P | Field mustard | nucleus | 54.81 | 49.14 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 52.4 | 49.1 |
| CDX81265 | Canola | nucleus | 53.85 | 47.06 |
| PGSC0003DMT400055393 | Potato | nucleus | 44.23 | 45.1 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 44.23 | 45.1 |
| KRH05603 | Soybean | cytosol, extracellular | 20.67 | 40.57 |
| GSMUA_Achr9P21360_001 | Banana | mitochondrion | 40.38 | 37.5 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 41.35 | 36.75 |
| GSMUA_Achr4P13790_001 | Banana | mitochondrion | 40.87 | 36.64 |
| GSMUA_Achr3P29520_001 | Banana | mitochondrion | 40.87 | 36.48 |
| GSMUA_Achr4P06820_001 | Banana | cytosol, mitochondrion, plastid | 40.87 | 36.32 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 38.94 | 35.53 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 38.94 | 33.75 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 39.9 | 33.07 |
| GSMUA_Achr4P03700_001 | Banana | cytosol, mitochondrion, nucleus | 39.42 | 25.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P30130_001 | EnsemblPlants:GSMUA_Achr3T30130_001 | EnsemblPlantsGene:GSMUA_Achr3G30130_001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI0002952AE4 | UniProt:M0SJ29 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
LOB domain-containing protein 39 [Source:GMGC_GENE;Acc:GSMUA_Achr3G30130_001]
Coordinates
chr3:+:28988998..28989790
Molecular Weight (calculated)
22188.4 Da
IEP (calculated)
8.272
GRAVY (calculated)
-0.206
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDSCLLR PCLQWIDSAE AQAHATVFVA KFFGRAGLMS FISAVPPSQR PALFQSLLFE ACGRTINPVN GAVGLLWAGN WHLCQEAVET
101: VLRGGTLRSL FGHGDDETPE ADGPCPRPRI GFSSFSAAKR RKAPAPSDAA AACDLDLCLT RRSPAGGFEE KRRRRPATPS MNSEGSVTTS GGESDSSTAE
201: PRLLNLFA
101: VLRGGTLRSL FGHGDDETPE ADGPCPRPRI GFSSFSAAKR RKAPAPSDAA AACDLDLCLT RRSPAGGFEE KRRRRPATPS MNSEGSVTTS GGESDSSTAE
201: PRLLNLFA
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.