Factsheet for GSMUA_Achr4P03700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	23.31	83.52
GSMUA_Achr4P13790_001	Banana	mitochondrion	51.84	72.84
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	48.77	67.95
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	47.24	67.54
GSMUA_Achr9P21360_001	Banana	mitochondrion	46.01	66.96
GSMUA_Achr3P29520_001	Banana	mitochondrion	47.55	66.52
CDY34735	Canola	nucleus	34.97	60.64
GSMUA_Achr9P00580_001	Banana	mitochondrion	43.25	60.26
CDY54302	Canola	cytosol, mitochondrion, nucleus	26.69	58.78
AT1G67100.1	Thale cress	mitochondrion	38.34	53.65
VIT_01s0011g03540.t01	Wine grape	nucleus	40.8	52.57
GSMUA_Achr1P20970_001	Banana	mitochondrion	40.18	52.19
Bra021433.1-P	Field mustard	nucleus	42.02	51.89
CDY12617	Canola	mitochondrion	39.26	51.82
CDY42342	Canola	mitochondrion	38.96	51.42
KRH18248	Soybean	nucleus	45.09	51.04
CDX74249	Canola	nucleus	40.49	50.77
AT3G02550.1	Thale cress	nucleus	40.49	50.19
KRH46923	Soybean	mitochondrion	45.4	50.0
CDX91999	Canola	nucleus	39.88	50.0
KRG93864	Soybean	nucleus	44.79	49.83
KRH01759	Soybean	mitochondrion	45.71	49.5
VIT_14s0006g02950.t01	Wine grape	mitochondrion	42.33	48.76
Solyc02g085910.2.1	Tomato	mitochondrion	40.49	48.71
PGSC0003DMT400032938	Potato	mitochondrion	40.49	48.35
GSMUA_Achr2P14600_001	Banana	mitochondrion	34.36	46.67
GSMUA_Achr3P18860_001	Banana	cytosol	25.15	43.16
GSMUA_Achr6P07770_001	Banana	mitochondrion	23.31	41.3
GSMUA_Achr3P30130_001	Banana	nucleus	25.15	39.42
GSMUA_Achr4P14150_001	Banana	mitochondrion	25.15	37.96
GSMUA_Achr7P26260_001	Banana	mitochondrion	24.23	37.26
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	22.09	34.45
GSMUA_Achr4P32550_001	Banana	mitochondrion	21.47	33.33
Os01t0129600-00	Rice	cytosol	26.38	25.37

Protein Annotations

EnsemblPlants:GSMUA_Achr4P03700_001	EnsemblPlants:GSMUA_Achr4T03700_001	EnsemblPlantsGene:GSMUA_Achr4G03700_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296E53B	UniProt:M0SKT7
MapMan:15.5.24	:	:	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G03700_001]

Coordinates

chr4:+:2950085..2952115

Molecular Weight (calculated)

36021.9 Da

IEP (calculated)

7.674

GRAVY (calculated)

-0.339

Length

326 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDDCS IRPCLRWIKS PESQANATVF LAKFYGRAGL MNLINAGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLLS GSWQLTQAAV
101: EAVLKGAPIV QIPSETAAST PTPPLKASDI RHISKDPGAG GCARAAAELH KESMSSADIA EASSHVSQGE PDRAEAEEDD EVGLELTLGS GPFSRSHRDE
201: ARRVHDPDAC TTDLGLASCE EHIFVINQEK HLELKKREKD DVLILKVTIQ NISSQKKFAL FFHPYRGIKR KWVYNDLELP SYQTRISWVD AAPELCQPQP
301: YPKTVTIFVI TCSRRRTGNR TVESFD

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.