CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91999	Canola	nucleus	96.15	96.15
CDY34735	Canola	nucleus	62.31	86.17
AT3G02550.1	Thale cress	nucleus	81.15	80.23
CDY54302	Canola	cytosol, mitochondrion, nucleus	39.23	68.92
CDY12617	Canola	mitochondrion	58.46	61.54
CDY42342	Canola	mitochondrion	58.46	61.54
GSMUA_Achr4P13790_001	Banana	mitochondrion	51.54	57.76
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	50.77	56.41
GSMUA_Achr9P21360_001	Banana	mitochondrion	48.08	55.8
Solyc02g085910.2.1	Tomato	mitochondrion	56.54	54.24
VIT_01s0011g03540.t01	Wine grape	nucleus	52.69	54.15
PGSC0003DMT400032938	Potato	mitochondrion	56.54	53.85
CDX96013	Canola	mitochondrion	42.69	46.84
CDY38588	Canola	cytosol, mitochondrion, nucleus	42.31	45.83
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	50.77	40.49
CDY17741	Canola	nucleus	32.31	38.36
CDY37852	Canola	nucleus	31.92	38.25
CDY58550	Canola	nucleus	31.92	38.25
CDY43575	Canola	nucleus	31.54	37.1
CDY67844	Canola	nucleus	32.31	37.0
CDY67455	Canola	nucleus	32.31	36.84
CDX69315	Canola	nucleus	31.54	36.77
CDY02101	Canola	nucleus	32.31	34.85
CDX81315	Canola	nucleus	31.54	34.75
CDX75662	Canola	nucleus	31.54	34.6
CDY23026	Canola	nucleus	31.15	33.75
CDY29564	Canola	nucleus	30.0	33.62
CDX72636	Canola	mitochondrion, nucleus	29.62	33.19
CDX81265	Canola	nucleus	29.62	32.35
Os01t0129600-00	Rice	cytosol	33.08	25.37

Protein Annotations

EnsemblPlants:CDX74249	EnsemblPlantsGene:GSBRNA2T00112032001	InterPro:IPR004883	InterPro:LOB	InterPro:LOBD	PANTHER:PTHR31304
PANTHER:PTHR31304:SF8	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155	ProteinID:CDX74249	ProteinID:CDX74249.1
SEG:seg	UniParc:UPI0004EF44E2	MapMan:15.5.24	:	:	:

Description

BnaA03g27980D

Coordinates

chrLK031800:+:1947505..1948788

Molecular Weight (calculated)

27857.5 Da

IEP (calculated)

8.267

GRAVY (calculated)

-0.216

Length

260 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV
101: EAVMKGEPIT EMATDAATNG QGPPLKMYDI RHISKDESSA AVAAAAATGS NDLKRPKPRR AKRVAGVAKP SESEEKEASH VSSLSHQSEV VAAQEGESNI
201: SEVMTFSPPA VQSSGEIKLD LTLGLEPVSH ACNVVPLKKR KIGAFATCQE DIPCKTELKL

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.