CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67455	Canola	nucleus	98.24	97.81
Bra012164.1-P	Field mustard	nucleus	98.24	87.11
CDY58550	Canola	nucleus	83.26	87.1
CDY37852	Canola	nucleus	83.26	87.1
CDY43575	Canola	nucleus	83.7	85.97
AT5G67420.2	Thale cress	nucleus	88.11	80.0
CDY17741	Canola	nucleus	74.89	77.63
CDX81315	Canola	nucleus	80.18	77.12
CDY02101	Canola	nucleus	74.01	69.71
CDY23026	Canola	nucleus	73.57	69.58
GSMUA_Achr3P18860_001	Banana	cytosol	55.07	65.79
PGSC0003DMT400064185	Potato	nucleus	60.79	65.09
Solyc02g092550.2.1	Tomato	extracellular	60.35	62.84
GSMUA_Achr4P14150_001	Banana	mitochondrion	57.27	60.19
GSMUA_Achr3P30130_001	Banana	nucleus	55.07	60.1
CDX69315	Canola	nucleus	59.03	60.09
GSMUA_Achr6P07770_001	Banana	mitochondrion	47.14	58.15
GSMUA_Achr7P26260_001	Banana	mitochondrion	53.74	57.55
CDX75662	Canola	nucleus	59.47	56.96
CDX72636	Canola	mitochondrion, nucleus	56.39	55.17
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	50.66	55.02
CDY29564	Canola	nucleus	55.51	54.31
CDX81265	Canola	nucleus	55.51	52.94
GSMUA_Achr4P32550_001	Banana	mitochondrion	47.14	50.95
Os03t0609500-01	Rice	cytosol, nucleus, plastid	47.14	46.12
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	46.7	45.49
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	45.81	45.22
TraesCS4B01G078800.1	Wheat	nucleus	45.37	44.78
HORVU4Hr1G013380.2	Barley	nucleus	44.93	44.74
KXG38039	Sorghum	mitochondrion, nucleus, plastid	47.58	43.72
CDY54302	Canola	cytosol, mitochondrion, nucleus	27.31	41.89
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	44.93	40.64
CDY34735	Canola	nucleus	30.84	37.23
CDY42342	Canola	mitochondrion	37.89	34.82
CDY12617	Canola	mitochondrion	37.89	34.82
CDX74249	Canola	nucleus	37.0	32.31
CDX91999	Canola	nucleus	37.0	32.31
CDY38588	Canola	cytosol, mitochondrion, nucleus	32.6	30.83
CDX96013	Canola	mitochondrion	32.16	30.8

Protein Annotations

EnsemblPlants:CDY67844	EnsemblPlantsGene:GSBRNA2T00066946001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF1
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY67844	ProteinID:CDY67844.1	SEG:seg	UniParc:UPI0004EE63E4
UniProt:A0A078JM09	MapMan:15.5.24	:	:	:	:

Description

BnaCnng56620DBnaCnng56620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM09]

Coordinates

chrLK036568:+:3822..5075

Molecular Weight (calculated)

24363.9 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.181

Length

227 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNVCQAAVET
101: VLRGGSLRPI PELLAHGGGF AGFPTATSEE ASEICTEILD SSPTKRKRVA CSEQQPSSEL DLSLIPNFPI KTTPSSTRQR SRTPSMNSEE SVTTTTTPTS
201: FWDNTATGGD MYGNGGGETS KLLNLFV

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.