Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064185 | Potato | nucleus | 91.74 | 94.34 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 68.81 | 65.79 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 56.88 | 65.26 |
| KRH04451 | Soybean | nucleus | 66.06 | 62.61 |
| KRH58049 | Soybean | mitochondrion, nucleus | 64.68 | 62.11 |
| CDY17741 | Canola | nucleus | 61.93 | 61.64 |
| CDY58550 | Canola | nucleus | 61.01 | 61.29 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 60.55 | 61.11 |
| CDY43575 | Canola | nucleus | 61.93 | 61.09 |
| CDY37852 | Canola | nucleus | 60.55 | 60.83 |
| CDY67844 | Canola | nucleus | 62.84 | 60.35 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 57.34 | 60.1 |
| CDY67455 | Canola | nucleus | 62.39 | 59.65 |
| KRH28374 | Soybean | nucleus | 65.14 | 59.17 |
| CDX69315 | Canola | nucleus | 60.09 | 58.74 |
| KRH77108 | Soybean | nucleus | 65.14 | 58.44 |
| Bra037847.1-P | Field mustard | nucleus | 62.39 | 57.63 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 57.34 | 57.6 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 55.5 | 57.08 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 48.17 | 57.07 |
| Bra031833.1-P | Field mustard | nucleus | 62.84 | 56.85 |
| Bra012913.1-P | Field mustard | nucleus | 62.84 | 56.85 |
| CDY23026 | Canola | nucleus | 62.39 | 56.67 |
| CDY02101 | Canola | nucleus | 62.39 | 56.43 |
| CDY29564 | Canola | nucleus | 59.63 | 56.03 |
| AT5G67420.2 | Thale cress | nucleus | 64.22 | 56.0 |
| CDX81315 | Canola | nucleus | 60.55 | 55.93 |
| Bra036040.1-P | Field mustard | nucleus | 62.84 | 55.92 |
| AT3G49940.1 | Thale cress | nucleus | 63.3 | 55.87 |
| CDX75662 | Canola | nucleus | 60.55 | 55.7 |
| Bra011772.1-P | Field mustard | nucleus | 60.55 | 55.7 |
| CDX72636 | Canola | mitochondrion, nucleus | 59.17 | 55.6 |
| Bra017831.1-P | Field mustard | nucleus | 59.17 | 55.6 |
| Bra012164.1-P | Field mustard | nucleus | 63.76 | 54.3 |
| AT4G37540.1 | Thale cress | nucleus | 59.63 | 54.17 |
| CDX81265 | Canola | nucleus | 57.34 | 52.52 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 48.62 | 50.72 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 44.5 | 47.55 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 45.41 | 47.14 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 45.87 | 43.1 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 45.41 | 43.04 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 45.41 | 43.04 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 44.95 | 42.98 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 45.87 | 42.92 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 45.87 | 40.49 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 44.95 | 39.04 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 38.07 | 32.68 |
| Solyc03g119530.2.1 | Tomato | cytosol, nucleus, plastid | 36.7 | 32.39 |
| Solyc02g085910.2.1 | Tomato | mitochondrion | 38.99 | 31.37 |
Protein Annotations
| EnsemblPlants:Solyc02g092550.2.1 | EnsemblPlantsGene:Solyc02g092550.2 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | UniParc:UPI00018DFE27 | UniProt:K4BD51 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr2:+:53604856..53605942
Molecular Weight (calculated)
23982.7 Da
IEP (calculated)
7.366
GRAVY (calculated)
-0.303
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET
101: VLRGGALRPI SEFLGASVEI DEVSDCTDVF KLQDPSLNMR PKMQKRRRSP EETSMLDLSL TPGFNQKVYN SHPLPENHRR PGTPSMNSEE SGTTTCFESS
201: AVIGDHQGKE PKLLSLFN
101: VLRGGALRPI SEFLGASVEI DEVSDCTDVF KLQDPSLNMR PKMQKRRRSP EETSMLDLSL TPGFNQKVYN SHPLPENHRR PGTPSMNSEE SGTTTCFESS
201: AVIGDHQGKE PKLLSLFN
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.