CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04451	Soybean	nucleus	93.39	92.17
KRH05602	Soybean	nucleus	19.82	73.77
KRH28374	Soybean	nucleus	73.57	69.58
KRH77108	Soybean	nucleus	72.69	67.9
VIT_07s0129g00330.t01	Wine grape	nucleus	65.64	65.35
PGSC0003DMT400064185	Potato	nucleus	60.79	65.09
Solyc02g092550.2.1	Tomato	extracellular	62.11	64.68
GSMUA_Achr3P18860_001	Banana	cytosol	53.74	64.21
CDX69315	Canola	nucleus	59.03	60.09
GSMUA_Achr3P30130_001	Banana	nucleus	53.3	58.17
AT4G37540.1	Thale cress	nucleus	61.23	57.92
GSMUA_Achr7P26260_001	Banana	mitochondrion	53.74	57.55
GSMUA_Achr4P14150_001	Banana	mitochondrion	54.63	57.41
Bra011772.1-P	Field mustard	nucleus	59.91	57.38
CDX75662	Canola	nucleus	59.91	57.38
CDX72636	Canola	mitochondrion, nucleus	58.59	57.33
KRH15442	Soybean	mitochondrion, nucleus	43.17	57.31
GSMUA_Achr6P07770_001	Banana	mitochondrion	46.26	57.07
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	42.29	56.14
KRH35680	Soybean	cytosol, mitochondrion, nucleus	42.29	56.14
CDY29564	Canola	nucleus	57.27	56.03
Bra017831.1-P	Field mustard	nucleus	56.83	55.6
CDX81265	Canola	nucleus	57.27	54.62
KRH61393	Soybean	nucleus	44.49	54.59
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	48.9	53.11
GSMUA_Achr4P32550_001	Banana	mitochondrion	47.14	50.95
KRH05603	Soybean	cytosol, extracellular	22.03	47.17
Os03t0609500-01	Rice	cytosol, nucleus, plastid	46.7	45.69
TraesCS4B01G078800.1	Wheat	nucleus	45.37	44.78
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	45.37	44.78
HORVU4Hr1G013380.2	Barley	nucleus	44.93	44.74
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	45.81	44.64
KXG38039	Sorghum	mitochondrion, nucleus, plastid	44.49	40.89
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	42.73	38.65
KRH45269	Soybean	nucleus	33.48	34.7
KRH18248	Soybean	nucleus	39.21	30.9
KRH46923	Soybean	mitochondrion	40.09	30.74
KRH01759	Soybean	mitochondrion	40.53	30.56
KRG90816	Soybean	nucleus	29.96	30.36
KRH48482	Soybean	mitochondrion	30.84	30.17
KRG93864	Soybean	nucleus	38.33	29.69

Protein Annotations

EMBL:ACUP02003194	EnsemblPlants:KRH58049	EnsemblPlantsGene:GLYMA_05G103300	EntrezGene:100816480	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH58049	ProteinID:KRH58049.1
SEG:seg	UniParc:UPI000233A3EA	UniProt:I1K2B8	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr5:+:27423781..27425313

Molecular Weight (calculated)

24791.6 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.309

Length

227 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSESCMLR PCLQWIETAQ AQGHATVFVA KFFGRAGLMS FISNVPENQR PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET
101: VLRGGTLRPM PELMGLDAPA AAATDEASEA EVACTDTWRI RNPNPNCRFT SSRSSGCGGG GKRKRSEELA KLQAQPNLDL RLTPVFSQKV ESRRPESPSM
201: TSVESGTTTE NRFGDQWGHR KVLNLFI

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.